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The map label for this gene is soxC [H]

Identifier: 15920288

GI number: 15920288

Start: 132060

End: 133649

Strand: Direct

Name: soxC [H]

Synonym: ST0109

Alternate gene names: 15920288

Gene position: 132060-133649 (Clockwise)

Preceding gene: 15920287

Following gene: 15920294

Centisome position: 4.9

GC content: 35.97

Gene sequence:

>1590_bases
ATGATCCGGATTACTCATACCAAATACCATCTAATCCAGCTTGTACTTCAGGGTGATAACGTGGAAGAAGAAAGACAGAG
CTGGTTAGATAAAGTCTTTCAATGGTTAGATGAAAGAGTAGGAATATATGGACATACTATCGCTAAAGCTCCAAGGTATG
CTTATAGGCTTGATTATTGGTTAGGCTCAATGGTACTTGCTGCCTTCACTTTAGCTGTAATAACTGGAGCCCTTGTTGCA
TTATATTACGTTCCTTCCGATCCTTATGCTTCTACAGTATATCTAATTACAAAGGTACCTTATGGAGCCTTATTATTTAG
TATACATACATGGGCCGCTTACGCAATGATATTTTTACTTATTATTCACATGACGAGAAACTTTATTGTAGGTGCTTATA
GGAAACCTAGAGAAATTATGTGGGTTGTCGGTGTAATATTAGCTGGATTAGCTTTAACTGAAGCATATTTAGGTTACTCC
TTACCATATAACTTAATATCTTGGACAGCAACCACTACTGGTCTGAATCTGTTCGCTTACATGCCTTTTAATTTAGCTGC
TCTAATCAAATTAATGACTACTGTACCAACTGATTTGCCCGGTATAGCTAGTGGCGTTGATCCCTTGGTTGATAGATTCT
TTATATTCCACTGGATTGTTGGAGGATTAATACTTCTGTTCATAATGATTCATTTGGCAATATTTGAAAAACACGGAGGA
CCTACACCACCACCTAGTAAGGAGTCAGGTCCAGAATTAATTGAGCATTTTAGGGATAAAATAGATAATGATCCTAATTG
GAGATTACAGCCATATACAAGAACTTTTGGAATGATATTAATGACTTTCTTCCTCATATTTGGTGCGGTAATACTCATTG
CATCATTAATACCATACAATATCGCAATTACTGGTAGCGGGCTTAAGTATACAATGCCAGAGTATAACCCCGTGTTGGCT
GCCCAAACACCACCAATACCAGACTGGTACTTCTTGTTTATTTACTTCTTTTATAAATCAGTACCCCCACAATATGCCTC
AATAATTTTCTTAGCCTGGATTCTAATCACACTATTATTTCCATTTATAGATCAGTATATCTTTAGACATAAAGCCAGTC
ATCCTATAATGAGACCAGCTGCAATAGCTTTAGGAACAGGGTTTATAATTTCCTTCATAGTAAACAGTATTTGGGCATAT
AAGACACCCGGAGTAGATATAGGACCTATAGGTGTTGAAGTAGATGGTTTAATTTTCTTAGCATCTTTTGTAGTACTCTA
CCCGTTAATAAAATTCTATTTAGCTCCAAGATCTATTAAAGGGGATTCCTCTGGAGGAAGTTTTGATTTTGGAAAAAGTA
TGAGTTTAAGGACTAAAACTCTGAATTTGCAACAGCAAAAATTAATACTAAGGTCTAGCGAAATAGCATTTATTGGATTA
GTCTCTTCATTTGTATATGTCACATCCCAGCTATTTGCATCTATGCAACTAGCATATCTAACAGTACAATTTGGAGTAGG
ATTTCTACTAGGATTAGACTTGCTACTATTAGCTGGTATACTAGGCTTCCTAATTTTTGGTGGTAAATAA

Upstream 100 bases:

>100_bases
ATAATTTTCCTAGAATACGATAATACAACTGGTGATATTTATGCTATAGGCACTAATGCACCATATTTCTCTAAAACTAG
ACCAACTAGTAATTTGATTT

Downstream 100 bases:

>100_bases
TTCGAACAAAATATCATAATACAATTTTTTTACATCATAATTTACACACTATTTTTTCTCAACACTACTATTTTTATTCA
TCTCAGCTTTAATGCTAAGA

Product: cytochrome b

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MIRITHTKYHLIQLVLQGDNVEEERQSWLDKVFQWLDERVGIYGHTIAKAPRYAYRLDYWLGSMVLAAFTLAVITGALVA
LYYVPSDPYASTVYLITKVPYGALLFSIHTWAAYAMIFLLIIHMTRNFIVGAYRKPREIMWVVGVILAGLALTEAYLGYS
LPYNLISWTATTTGLNLFAYMPFNLAALIKLMTTVPTDLPGIASGVDPLVDRFFIFHWIVGGLILLFIMIHLAIFEKHGG
PTPPPSKESGPELIEHFRDKIDNDPNWRLQPYTRTFGMILMTFFLIFGAVILIASLIPYNIAITGSGLKYTMPEYNPVLA
AQTPPIPDWYFLFIYFFYKSVPPQYASIIFLAWILITLLFPFIDQYIFRHKASHPIMRPAAIALGTGFIISFIVNSIWAY
KTPGVDIGPIGVEVDGLIFLASFVVLYPLIKFYLAPRSIKGDSSGGSFDFGKSMSLRTKTLNLQQQKLILRSSEIAFIGL
VSSFVYVTSQLFASMQLAYLTVQFGVGFLLGLDLLLLAGILGFLIFGGK

Sequences:

>Translated_529_residues
MIRITHTKYHLIQLVLQGDNVEEERQSWLDKVFQWLDERVGIYGHTIAKAPRYAYRLDYWLGSMVLAAFTLAVITGALVA
LYYVPSDPYASTVYLITKVPYGALLFSIHTWAAYAMIFLLIIHMTRNFIVGAYRKPREIMWVVGVILAGLALTEAYLGYS
LPYNLISWTATTTGLNLFAYMPFNLAALIKLMTTVPTDLPGIASGVDPLVDRFFIFHWIVGGLILLFIMIHLAIFEKHGG
PTPPPSKESGPELIEHFRDKIDNDPNWRLQPYTRTFGMILMTFFLIFGAVILIASLIPYNIAITGSGLKYTMPEYNPVLA
AQTPPIPDWYFLFIYFFYKSVPPQYASIIFLAWILITLLFPFIDQYIFRHKASHPIMRPAAIALGTGFIISFIVNSIWAY
KTPGVDIGPIGVEVDGLIFLASFVVLYPLIKFYLAPRSIKGDSSGGSFDFGKSMSLRTKTLNLQQQKLILRSSEIAFIGL
VSSFVYVTSQLFASMQLAYLTVQFGVGFLLGLDLLLLAGILGFLIFGGK
>Mature_529_residues
MIRITHTKYHLIQLVLQGDNVEEERQSWLDKVFQWLDERVGIYGHTIAKAPRYAYRLDYWLGSMVLAAFTLAVITGALVA
LYYVPSDPYASTVYLITKVPYGALLFSIHTWAAYAMIFLLIIHMTRNFIVGAYRKPREIMWVVGVILAGLALTEAYLGYS
LPYNLISWTATTTGLNLFAYMPFNLAALIKLMTTVPTDLPGIASGVDPLVDRFFIFHWIVGGLILLFIMIHLAIFEKHGG
PTPPPSKESGPELIEHFRDKIDNDPNWRLQPYTRTFGMILMTFFLIFGAVILIASLIPYNIAITGSGLKYTMPEYNPVLA
AQTPPIPDWYFLFIYFFYKSVPPQYASIIFLAWILITLLFPFIDQYIFRHKASHPIMRPAAIALGTGFIISFIVNSIWAY
KTPGVDIGPIGVEVDGLIFLASFVVLYPLIKFYLAPRSIKGDSSGGSFDFGKSMSLRTKTLNLQQQKLILRSSEIAFIGL
VSSFVYVTSQLFASMQLAYLTVQFGVGFLLGLDLLLLAGILGFLIFGGK

Specific function: Binds 2 heme groups (b586 and b606) which are not covalently bound to the protein [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=310, Percent_Identity=24.8387096774194, Blast_Score=76, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6226529, Length=318, Percent_Identity=27.0440251572327, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6226532, Length=191, Percent_Identity=28.2722513089005, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59418; Mature: 59418

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50003 PH_DOMAIN ; PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRITHTKYHLIQLVLQGDNVEEERQSWLDKVFQWLDERVGIYGHTIAKAPRYAYRLDYW
CEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHH
LGSMVLAAFTLAVITGALVALYYVPSDPYASTVYLITKVPYGALLFSIHTWAAYAMIFLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
IIHMTRNFIVGAYRKPREIMWVVGVILAGLALTEAYLGYSLPYNLISWTATTTGLNLFAY
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEE
MPFNLAALIKLMTTVPTDLPGIASGVDPLVDRFFIFHWIVGGLILLFIMIHLAIFEKHGG
CHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTPPPSKESGPELIEHFRDKIDNDPNWRLQPYTRTFGMILMTFFLIFGAVILIASLIPYN
CCCCCCCCCCHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IAITGSGLKYTMPEYNPVLAAQTPPIPDWYFLFIYFFYKSVPPQYASIIFLAWILITLLF
EEEECCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
PFIDQYIFRHKASHPIMRPAAIALGTGFIISFIVNSIWAYKTPGVDIGPIGVEVDGLIFL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
ASFVVLYPLIKFYLAPRSIKGDSSGGSFDFGKSMSLRTKTLNLQQQKLILRSSEIAFIGL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHCCHHHHHHHHHCCCCHHHHH
VSSFVYVTSQLFASMQLAYLTVQFGVGFLLGLDLLLLAGILGFLIFGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRITHTKYHLIQLVLQGDNVEEERQSWLDKVFQWLDERVGIYGHTIAKAPRYAYRLDYW
CEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHH
LGSMVLAAFTLAVITGALVALYYVPSDPYASTVYLITKVPYGALLFSIHTWAAYAMIFLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
IIHMTRNFIVGAYRKPREIMWVVGVILAGLALTEAYLGYSLPYNLISWTATTTGLNLFAY
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEE
MPFNLAALIKLMTTVPTDLPGIASGVDPLVDRFFIFHWIVGGLILLFIMIHLAIFEKHGG
CHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTPPPSKESGPELIEHFRDKIDNDPNWRLQPYTRTFGMILMTFFLIFGAVILIASLIPYN
CCCCCCCCCCHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IAITGSGLKYTMPEYNPVLAAQTPPIPDWYFLFIYFFYKSVPPQYASIIFLAWILITLLF
EEEECCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
PFIDQYIFRHKASHPIMRPAAIALGTGFIISFIVNSIWAYKTPGVDIGPIGVEVDGLIFL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
ASFVVLYPLIKFYLAPRSIKGDSSGGSFDFGKSMSLRTKTLNLQQQKLILRSSEIAFIGL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHCCHHHHHHHHHCCCCHHHHH
VSSFVYVTSQLFASMQLAYLTVQFGVGFLLGLDLLLLAGILGFLIFGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]