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The map label for this gene is fdhD

Identifier: 15920262

GI number: 15920262

Start: 106786

End: 107553

Strand: Direct

Name: fdhD

Synonym: ST0084

Alternate gene names: 15920262

Gene position: 106786-107553 (Clockwise)

Preceding gene: 15920261

Following gene: 15920263

Centisome position: 3.96

GC content: 35.16

Gene sequence:

>768_bases
GTGCAAGTAAAGAGGGTTAAGGTATTTAAGATTAGAAATGAAACAGAGGCAGTAGAAGATGATTTCGTAGCGGAGGAAGA
ACCATTAGAAGTTAGGACATGCTATGATGATTGTCAAACGTTTGCAATTATCATGAGAACTCCAGGTAATGATAAGGAAT
TGGTTTTAGGTTTTTTATATTCGGAAGGAGCTATAGATACGATAGATGATGTTTCATCAGTCTCAATAAAGGGCGATAAT
GTGGTAGAAGTTAGGTTAAATAAACCTTTAAAGGTTAAAGTACGTGAGATGATTGTAAATTCTAGCTGTGGTGTATGTGG
TAGAGCATTCCTCTATACACTTAATATATTAAAATGTAATACTAGAGTAAGTAGGGACGTCATATTTTCTTTGCCAGAAA
AATTGAAGGAGAATCAAGAGGTATTTAAGATTACTGGAGGACTCCATGCTGCTGCCCTTTTTACTACTTCTGGGGAGTTG
AATTATTTATATGAGGATGTTGGAAGACATAATGCAGTAGATAAGTTAATTGGAAGACTGCTACTGGAGAGAAAAATACC
TGCAAGCAATTACATTATGCAGGTTAGTGGAAGACTAGGCTATGAGATTGTAAGTAAGGGAATAAAGGCTGGTATACCAA
TTATTTGTGGAATTTCTGCACCTACAAGTTTAGCCGTTGATATTGCTGAGGAAGCTGGAGTTACTCTTATTGGGTTTTTA
AGGGGAAATAGTTTTAATATTTATACACATAAAGAAAGAGTAATTTGA

Upstream 100 bases:

>100_bases
ACTGGCGAGATACATATGGCAGATATAATAAGGATGTTAAATGATCCAGATGTTAGAAAGGGGGTATATCTTGTACTAAA
GATTCTTAAGGCGATTGGAA

Downstream 100 bases:

>100_bases
AATTTCCAAAACATATTTAAGGTTTAAGAAGAAATAAATAATATGCTTCTACATGTAGAAGAAGATGAGGACATAAAGCT
TATCGTAGACTCTTTAAAGG

Product: formate dehydrogenase subunit FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQVKRVKVFKIRNETEAVEDDFVAEEEPLEVRTCYDDCQTFAIIMRTPGNDKELVLGFLYSEGAIDTIDDVSSVSIKGDN
VVEVRLNKPLKVKVREMIVNSSCGVCGRAFLYTLNILKCNTRVSRDVIFSLPEKLKENQEVFKITGGLHAAALFTTSGEL
NYLYEDVGRHNAVDKLIGRLLLERKIPASNYIMQVSGRLGYEIVSKGIKAGIPIICGISAPTSLAVDIAEEAGVTLIGFL
RGNSFNIYTHKERVI

Sequences:

>Translated_255_residues
MQVKRVKVFKIRNETEAVEDDFVAEEEPLEVRTCYDDCQTFAIIMRTPGNDKELVLGFLYSEGAIDTIDDVSSVSIKGDN
VVEVRLNKPLKVKVREMIVNSSCGVCGRAFLYTLNILKCNTRVSRDVIFSLPEKLKENQEVFKITGGLHAAALFTTSGEL
NYLYEDVGRHNAVDKLIGRLLLERKIPASNYIMQVSGRLGYEIVSKGIKAGIPIICGISAPTSLAVDIAEEAGVTLIGFL
RGNSFNIYTHKERVI
>Mature_255_residues
MQVKRVKVFKIRNETEAVEDDFVAEEEPLEVRTCYDDCQTFAIIMRTPGNDKELVLGFLYSEGAIDTIDDVSSVSIKGDN
VVEVRLNKPLKVKVREMIVNSSCGVCGRAFLYTLNILKCNTRVSRDVIFSLPEKLKENQEVFKITGGLHAAALFTTSGEL
NYLYEDVGRHNAVDKLIGRLLLERKIPASNYIMQVSGRLGYEIVSKGIKAGIPIICGISAPTSLAVDIAEEAGVTLIGFL
RGNSFNIYTHKERVI

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=265, Percent_Identity=32.8301886792453, Blast_Score=114, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_SULTO (Q976V6)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_375931.1
- ProteinModelPortal:   Q976V6
- SMR:   Q976V6
- GeneID:   1457964
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0084
- NMPDR:   fig|273063.1.peg.99
- HOGENOM:   HBG732883
- OMA:   ELRMWLA
- ProtClustDB:   CLSK803533
- BioCyc:   STOK273063:ST0084-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 28309; Mature: 28309

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVKRVKVFKIRNETEAVEDDFVAEEEPLEVRTCYDDCQTFAIIMRTPGNDKELVLGFLY
CCCEEEEEEEECCCHHHHHHHCCCCCCCCEEEHHHHCCCEEEEEEECCCCCCEEEEEEEE
SEGAIDTIDDVSSVSIKGDNVVEVRLNKPLKVKVREMIVNSSCGVCGRAFLYTLNILKCN
CCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEHHHHHHCCCCCHHHHHHHHEEEEEEEC
TRVSRDVIFSLPEKLKENQEVFKITGGLHAAALFTTSGELNYLYEDVGRHNAVDKLIGRL
CCCCHHHHHHCHHHHCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHH
LLERKIPASNYIMQVSGRLGYEIVSKGIKAGIPIICGISAPTSLAVDIAEEAGVTLIGFL
HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEHHHCCCEEEEEE
RGNSFNIYTHKERVI
ECCEEEEEECCCCCC
>Mature Secondary Structure
MQVKRVKVFKIRNETEAVEDDFVAEEEPLEVRTCYDDCQTFAIIMRTPGNDKELVLGFLY
CCCEEEEEEEECCCHHHHHHHCCCCCCCCEEEHHHHCCCEEEEEEECCCCCCEEEEEEEE
SEGAIDTIDDVSSVSIKGDNVVEVRLNKPLKVKVREMIVNSSCGVCGRAFLYTLNILKCN
CCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEHHHHHHCCCCCHHHHHHHHEEEEEEEC
TRVSRDVIFSLPEKLKENQEVFKITGGLHAAALFTTSGELNYLYEDVGRHNAVDKLIGRL
CCCCHHHHHHCHHHHCCCCEEEEEECCCEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHH
LLERKIPASNYIMQVSGRLGYEIVSKGIKAGIPIICGISAPTSLAVDIAEEAGVTLIGFL
HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEHHHCCCEEEEEE
RGNSFNIYTHKERVI
ECCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479