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The map label for this gene is atpD [H]

Identifier: 15893158

GI number: 15893158

Start: 1141337

End: 1142836

Strand: Reverse

Name: atpD [H]

Synonym: RC1235

Alternate gene names: 15893158

Gene position: 1142836-1141337 (Counterclockwise)

Preceding gene: 15893159

Following gene: 15893157

Centisome position: 90.08

GC content: 40.33

Gene sequence:

>1500_bases
TTGCTCTTTTCCACATTAAACTGCGTCTATCTGTTCTTCATTTTATTTGTATTATATTTTTTAACAAAAGAAAAAATCAT
GACAAAAAATATTGGAAAAATTACTCAGATTATTTCAGCGGTGGTGGATGTAAAATTTACGAATAACGGTGAGTTACCGA
AAATTTTAAATGCTCTAGAGTGCTATAACGATAAACAAAGGATAGTCCTGGAAGTAGCACAACATATAGGTGATGATACA
GTGCGTTGTATTGCTATGGATTCTATGGAAGGGTTAGTGCGGGGCGTAGAAGTAATAGATACAGGCAGTCCTATTCGTAT
TCCTGTAGGTACTGAGACGCTTGGGCGTATTATGAATGTTGTAGGTGAGCCGATTGACGGTAAAGGAGACATTAAAAGCT
CAAATATTTCTTCTATATATAAGCCTGCTCCTGATTTTACCCATCAGTCAACCGAGTGTAATATATTAGTAACTGGTATT
AAAGTTATTGATTTACTTGCTCCTTATACTAAAGGCGGTAAAATAGGACTATTCGGTGGTGCAGGAGTCGGTAAAACCGT
GCTTATAATGGAGCTTATTAATAACGTAGCTAAAGCACACGGCGGTTATACGGTATTTGCAGGAGTTGGTGAGAGAACTA
GAGAAGGTAATGATCTTTACCATGAAATGATTGACTCGGGTGTTATTAACCTTGCAGAGCCTGAAAAGTCAAAAGTAGCT
TTAGTTTATGGACAAATGAACGAGCCGCCGGGAGCAAGGGCAAGAGTTGCGTTAAGCGGTCTGACCATTGCAGAGAGTTT
TAGAGATATGAATGAAGGGCAAGATGTTTTGTTTTTTGTAGATAATATTTTCCGTTTTACTCAAGCAGGTTCTGAAGTAT
CGGCGTTACTCGGTAGGATTCCGTCAGCGGTAGGGTATCAGCCTACTCTTGCAACCGATATGGGTGAGCTACAAGAGCGT
ATCACCTCTACTAAGTACGGCTCAATAACTTCCGTGCAGGCTATATATGTACCGGCGGATGATTTAACTGATCCTGCTCC
TGCTACTTCTTTTGCACATTTAGATGCTACAACGGTACTTAGCCGTCAGATAGCTGAGTTTGGGATTTATCCGGCAGTTG
ATCCGTTAGATAGTAATTCGCAGGTACTTGATCCGATGATTGTCGGTGAAGAACATTATAGTGTAGCAAGACAAGTGCAG
CAGGTTTTACAAACTTATAAATCGTTGCAGGATATTATCACTATTTTAGGTATGGATGAGCTATCCGAAGAAGATAAACT
AACCGTGGCACGTGCTAGAAAAATACAGCGTTTCTTATCGCAGCCTTTCCATGTCGCTGAAGTATTTACCGGAGCTGCAG
GCAAATTTGTTAATCTAGCCGATACTATCGCAGGCTTTAAAGGACTTGTAGAGGGTAAATACGATGATTTACCGGAAGCT
GCTTTTTATATGGTCGGAACTATAGACGAGGCTATAGAGAAGGCGCAGACGTTGAAGTGA

Upstream 100 bases:

>100_bases
GTTTAGATATACTCGTTTAATTTGAAAAATTGGCGTCGTTGTTTCATATTTTTTGATCCTCACGTACTAGTATATACGCT
GTCAAAAAATATGAAACGCC

Downstream 100 bases:

>100_bases
CGTTGATGTCATTCCCGCGTAGGCGGGAATGACGTAGTAATTTTACTATATTATTCTATGAACGCAACAATTCTAGTCAA
AATAATTACTCCTTTAAGTA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MLFSTLNCVYLFFILFVLYFLTKEKIMTKNIGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDT
VRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGI
KVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVINLAEPEKSKVA
LVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQER
ITSTKYGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQ
QVLQTYKSLQDIITILGMDELSEEDKLTVARARKIQRFLSQPFHVAEVFTGAAGKFVNLADTIAGFKGLVEGKYDDLPEA
AFYMVGTIDEAIEKAQTLK

Sequences:

>Translated_499_residues
MLFSTLNCVYLFFILFVLYFLTKEKIMTKNIGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDT
VRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGI
KVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVINLAEPEKSKVA
LVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQER
ITSTKYGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQ
QVLQTYKSLQDIITILGMDELSEEDKLTVARARKIQRFLSQPFHVAEVFTGAAGKFVNLADTIAGFKGLVEGKYDDLPEA
AFYMVGTIDEAIEKAQTLK
>Mature_499_residues
MLFSTLNCVYLFFILFVLYFLTKEKIMTKNIGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDT
VRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGI
KVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVINLAEPEKSKVA
LVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGELQER
ITSTKYGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQ
QVLQTYKSLQDIITILGMDELSEEDKLTVARARKIQRFLSQPFHVAEVFTGAAGKFVNLADTIAGFKGLVEGKYDDLPEA
AFYMVGTIDEAIEKAQTLK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=467, Percent_Identity=76.4453961456103, Blast_Score=720, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=326, Percent_Identity=26.9938650306748, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI19913426, Length=377, Percent_Identity=25.4641909814324, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI19913428, Length=368, Percent_Identity=24.4565217391304, Blast_Score=90, Evalue=6e-18,
Organism=Homo sapiens, GI50345984, Length=288, Percent_Identity=25, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI4757810, Length=288, Percent_Identity=25, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=68.0942184154176, Blast_Score=644, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=312, Percent_Identity=29.4871794871795, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1790172, Length=326, Percent_Identity=24.8466257668712, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=74.5182012847966, Blast_Score=707, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=325, Percent_Identity=28.3076923076923, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=363, Percent_Identity=24.7933884297521, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17570191, Length=358, Percent_Identity=24.8603351955307, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71988080, Length=285, Percent_Identity=24.5614035087719, Blast_Score=85, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=285, Percent_Identity=24.5614035087719, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=23.6842105263158, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=73.7527114967462, Blast_Score=690, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=367, Percent_Identity=25.3405994550409, Blast_Score=97, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6319370, Length=366, Percent_Identity=25.4098360655738, Blast_Score=83, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=237, Percent_Identity=27.0042194092827, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=76.6595289079229, Blast_Score=720, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=70.5128205128205, Blast_Score=661, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=67.3913043478261, Blast_Score=123, Evalue=4e-28,
Organism=Drosophila melanogaster, GI20129479, Length=301, Percent_Identity=27.2425249169435, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583992, Length=347, Percent_Identity=25.6484149855908, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583988, Length=322, Percent_Identity=27.0186335403727, Blast_Score=108, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24583986, Length=322, Percent_Identity=27.0186335403727, Blast_Score=108, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24583984, Length=322, Percent_Identity=27.0186335403727, Blast_Score=108, Evalue=9e-24,
Organism=Drosophila melanogaster, GI281361666, Length=361, Percent_Identity=25.207756232687, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24646341, Length=361, Percent_Identity=25.207756232687, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI17136796, Length=361, Percent_Identity=25.207756232687, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24658560, Length=285, Percent_Identity=24.9122807017544, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 54298; Mature: 54298

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSTLNCVYLFFILFVLYFLTKEKIMTKNIGKITQIISAVVDVKFTNNGELPKILNALE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
CYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNV
HCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCHHEEECCCCEEEECCHHHHHHHHHH
VGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGG
HCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCEEEEECC
AGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVINLAEPEKSKVA
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCEE
LVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRI
EEEECCCCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHC
PSAVGYQPTLATDMGELQERITSTKYGSITSVQAIYVPADDLTDPAPATSFAHLDATTVL
CHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
SRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIITILGMDE
HHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LSEEDKLTVARARKIQRFLSQPFHVAEVFTGAAGKFVNLADTIAGFKGLVEGKYDDLPEA
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
AFYMVGTIDEAIEKAQTLK
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLFSTLNCVYLFFILFVLYFLTKEKIMTKNIGKITQIISAVVDVKFTNNGELPKILNALE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
CYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNV
HCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCHHEEECCCCEEEECCHHHHHHHHHH
VGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGG
HCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCEEEEECC
AGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREGNDLYHEMIDSGVINLAEPEKSKVA
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCEE
LVYGQMNEPPGARARVALSGLTIAESFRDMNEGQDVLFFVDNIFRFTQAGSEVSALLGRI
EEEECCCCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHC
PSAVGYQPTLATDMGELQERITSTKYGSITSVQAIYVPADDLTDPAPATSFAHLDATTVL
CHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
SRQIAEFGIYPAVDPLDSNSQVLDPMIVGEEHYSVARQVQQVLQTYKSLQDIITILGMDE
HHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LSEEDKLTVARARKIQRFLSQPFHVAEVFTGAAGKFVNLADTIAGFKGLVEGKYDDLPEA
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
AFYMVGTIDEAIEKAQTLK
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA