Click here to switch to the map view.

The map label for this gene is 15893049

Identifier: 15893049

GI number: 15893049

Start: 1044915

End: 1045316

Strand: Reverse

Name: 15893049

Synonym: RC1126

Alternate gene names: NA

Gene position: 1045316-1044915 (Counterclockwise)

Preceding gene: 15893050

Following gene: 15893048

Centisome position: 82.39

GC content: 34.58

Gene sequence:

>402_bases
TTGGAAAAATTGGCAAGAAAATTTTTAACTTACAAAATTGCTTGGCAAAATTTCTTTATGGTCATACCTGTTGTGTCTAC
AACTTTTCACTCATTCGATAAAATGTTGGCAACATCCGAACATAATGCAATTCCTTGGTTATTTATTGATGAAGCAGGGC
AGATACCGCCACAATACGCAGCTAGTGCTATTTACAAATCAACAAAAGTCGTAGTAGTCGGTGATCCGCTGCAAACAGAT
CCTATTTCTATATTAAAGCAAGATTTAATCAAATTATGTGAACATTTTAAGGTTTCATATCCTGAGTGGTCACCTTCGGA
AGTTTCATTGCAAAACCTAGCTGACCGTAATTCTTTATATCAAACAAAAATAGATGATGTTACGGTTAGTTTCCCTTTAT
GA

Upstream 100 bases:

>100_bases
CTGTAGAAGAAATAAAACAGCTTAACGACGATATAAGCTTGGCTATCGTAAGTTTAAAAGATAAATATTTCAATATTAAG
GATTTTGAAGAAGATTTATT

Downstream 100 bases:

>100_bases
GTGCATAGAAGATGCCAAAATCTGATGTTTAAAATATGTAACAAAATAGCTTACGGTGACAAAATGATTTTTGCTACCTC
TGATTGTAACTTTGATATTA

Product: hypothetical protein

Products: NA

Alternate protein names: Superfamily I DNA/RNA Helicase; Superfamily I DNA And RNA Helicase; Superfamily I DNA Helicase; DNA2/NAM7 Helicase Family Protein; DNA Helicase; Superfamily I DNA And RNA Helicase And Helicase Subunits

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MEKLARKFLTYKIAWQNFFMVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYAASAIYKSTKVVVVGDPLQTD
PISILKQDLIKLCEHFKVSYPEWSPSEVSLQNLADRNSLYQTKIDDVTVSFPL

Sequences:

>Translated_133_residues
MEKLARKFLTYKIAWQNFFMVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYAASAIYKSTKVVVVGDPLQTD
PISILKQDLIKLCEHFKVSYPEWSPSEVSLQNLADRNSLYQTKIDDVTVSFPL
>Mature_133_residues
MEKLARKFLTYKIAWQNFFMVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYAASAIYKSTKVVVVGDPLQTD
PISILKQDLIKLCEHFKVSYPEWSPSEVSLQNLADRNSLYQTKIDDVTVSFPL

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15183; Mature: 15183

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLARKFLTYKIAWQNFFMVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYA
CHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
ASAIYKSTKVVVVGDPLQTDPISILKQDLIKLCEHFKVSYPEWSPSEVSLQNLADRNSLY
HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH
QTKIDDVTVSFPL
EEECCCEEEEECC
>Mature Secondary Structure
MEKLARKFLTYKIAWQNFFMVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYA
CHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
ASAIYKSTKVVVVGDPLQTDPISILKQDLIKLCEHFKVSYPEWSPSEVSLQNLADRNSLY
HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH
QTKIDDVTVSFPL
EEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA