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The map label for this gene is himA [C]

Identifier: 15893011

GI number: 15893011

Start: 1015018

End: 1015305

Strand: Reverse

Name: himA [C]

Synonym: RC1088

Alternate gene names: 15893011

Gene position: 1015305-1015018 (Counterclockwise)

Preceding gene: 15893012

Following gene: 15893010

Centisome position: 80.02

GC content: 29.17

Gene sequence:

>288_bases
ATGACTATTACCAAAGCAAAAATTGCAGCTATGTTAAGCTCTAAATTGGGTTTTTCAAATAATTTATGCGAGGAAATAGT
TCATACGGTTTTTTCTAATATTTTAGAAATAGCAAAAGAGCAAAAATTAACTTTAAAGAATTTTGGTAGCTTTGAGGTGA
AACAAAAAAATCCACGTCCCGGAATAAATTTTCATACCAAAGCACCGGTAATTATAGAATCAAAAAAGCATTTACGTTTT
GTCCCTTCTTCTAAATTAAAAGCTTTAATTAATGAATCTACTCGATGA

Upstream 100 bases:

>100_bases
CTCATAAAGTAGGATCAACTTCTGAGATTGCTTCGTCGAAACTTATAGTTTCTCCTTGCAATGACTGCAGACAATATACC
CTTAAAAACCGGTATTATTT

Downstream 100 bases:

>100_bases
ACTTCGTTATAATTTGTTGGCTTGTTGTATGTCTCGGAAAATGCTTTTTATGTCATTCCCGCGAAAGCAGGAATCCAGTA
AAACCTATAAAAAACTTGTT

Product: integration host factor alpha-subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MTITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIAKEQKLTLKNFGSFEVKQKNPRPGINFHTKAPVIIESKKHLRF
VPSSKLKALINESTR

Sequences:

>Translated_95_residues
MTITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIAKEQKLTLKNFGSFEVKQKNPRPGINFHTKAPVIIESKKHLRF
VPSSKLKALINESTR
>Mature_94_residues
TITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIAKEQKLTLKNFGSFEVKQKNPRPGINFHTKAPVIIESKKHLRFV
PSSKLKALINESTR

Specific function: This Protein Is One Of The Two Subunits Of Integration Host Factor, A Specific DNA-Binding Protein That Functions In Genetic Recombination As Well As In Transcriptional And Translational Control. Ihf Also Plays A Crucial Role In The Lysogenic Life Cycle O

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HLP_RICCN (Q92GN5)

Other databases:

- EMBL:   AE006914
- PIR:   H97835
- RefSeq:   NP_360725.1
- HSSP:   P0A6X7
- ProteinModelPortal:   Q92GN5
- GeneID:   928237
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1088
- OMA:   NFHTKSP
- ProtClustDB:   CLSK871045
- BioCyc:   RCON272944:RC1088-MONOMER
- InterPro:   IPR000119
- InterPro:   IPR010992
- Gene3D:   G3DSA:4.10.520.10
- SMART:   SM00411

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10681; Mature: 10550

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIAKEQKLTLKNFGSFEVKQKNPRP
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCC
GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR
CCCCCCCCCEEEECCCCEEECCCHHHHHHHHCCCC
>Mature Secondary Structure 
TITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIAKEQKLTLKNFGSFEVKQKNPRP
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCC
GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR
CCCCCCCCCEEEECCCCEEECCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893