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The map label for this gene is cspA

Identifier: 15892944

GI number: 15892944

Start: 946852

End: 947064

Strand: Reverse

Name: cspA

Synonym: RC1021

Alternate gene names: 15892944

Gene position: 947064-946852 (Counterclockwise)

Preceding gene: 15892945

Following gene: 15892943

Centisome position: 74.65

GC content: 35.21

Gene sequence:

>213_bases
ATGGCTACAAATATAGTAGGTAAAGTTAAGTGGTATAATTCTACAAAGAATTTTGGATTTATTGAACAGGACAATGGCGG
CAAAGATGTGTTTGTACACAAATCAGCCGTAGACGCAGCAGGTTTACATAGCCTTGAAGAAGGACAAGATGTAATTTTTG
ATCTTGAAGAAAAGCAAGGAAAAGCCTATGCTGTTAACCTCAGAATTAAATAA

Upstream 100 bases:

>100_bases
GCTCTTATATTTAAGTAAGGCTTAAAGTAAAATTTAAGTTTTAGTTATTATAAGCGTGTGTTAAGTTCAAATAAGTAATT
TCTATCTAATAAAGGTTTTT

Downstream 100 bases:

>100_bases
ATTTATAATACCAAAAGCAGCTATCCAAAATTGTTTATAATTTAGGGTAGCCTAGTCATCTTTATCAAAATAGTAAATAT
TTTGTTTTTGTCTTATAATA

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQGKAYAVNLRIK

Sequences:

>Translated_70_residues
MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQGKAYAVNLRIK
>Mature_69_residues
ATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQGKAYAVNLRIK

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=49.2063492063492, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI1789979, Length=57, Percent_Identity=52.6315789473684, Blast_Score=63, Evalue=3e-12,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=43.2835820895522, Blast_Score=62, Evalue=6e-12,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=44.6153846153846, Blast_Score=60, Evalue=2e-11,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=43.4782608695652, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): CSPA_RICCN (Q92GV1)

Other databases:

- EMBL:   AE006914
- PIR:   E97827
- RefSeq:   NP_360658.1
- ProteinModelPortal:   Q92GV1
- SMR:   Q92GV1
- GeneID:   928167
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1021
- OMA:   NIGQDIK
- ProtClustDB:   CLSK871024
- BioCyc:   RCON272944:RC1021-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7771; Mature: 7640

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQG
CCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC
KAYAVNLRIK
CEEEEEEEEC
>Mature Secondary Structure 
ATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQG
CCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC
KAYAVNLRIK
CEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893