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The map label for this gene is ygcF [C]

Identifier: 15892856

GI number: 15892856

Start: 875124

End: 875801

Strand: Reverse

Name: ygcF [C]

Synonym: RC0933

Alternate gene names: 15892856

Gene position: 875801-875124 (Counterclockwise)

Preceding gene: 15892861

Following gene: 15892855

Centisome position: 69.03

GC content: 33.48

Gene sequence:

>678_bases
ATGTTTGGACAAAATCCTAAAAGAAGCATATTAAACGGTGACGGTACTCAGTTAGAGGTACAGTCTATTTTTAAGACTAT
ACAAGGGGAGGGCATTTTTGTAGGTTGTCCTGCGATCTTTATTAGGCTTGGAGGATGTAATCTTGCTTGTAATTTTTGTG
ATACGGAGTTTGAAGATTTTGATTTAGTAGATATAGATAAGATTTTGAATAAAGTAGAAAGCCTGGCATTAAATTCTAAA
AATGAAAAATCGATTAATTTAGTAGTAATAACAGGCGGTGAGCCGATGCGTCAACCTATAGAGTTATTATGTCAGAAGTT
ATTAGACCGAGATGTTAAAGTTCAAATAGAGACTAACGGTACGTTATATCGTTCTTTGCCGAAAGAAGTGTCTATAATTT
GTTCGCCGAAGGTAGGTAAAACCGGTTATAGTAAAATAAGAGAAGATTTATTGCCTAAAATTAGTGCGGTGAAATTTATC
GTTGCTAAAAATATTTTAGAATATAGTCTCATACCGGAAGTAGGGCAAACCTCTTATAATATACCGGTTTTTATTCAACC
TATGGATCAAAACAACCAAAGACTTAATGGCGAAAATAATGAGTTAGCAGTAAAATTAGCATTAGAAAGCGGTGCTAGAT
TATCTCTGCAAACTCATAAATTTTTAAATATCCCATAG

Upstream 100 bases:

>100_bases
ACCGATGAAACCTAGATAATAGTTTTTTTTATTAGTTATTGCAAGATTTTTTTATAAAAATGTACTATAATGTTTTTAAT
CAATCGATAATAATTTAAAA

Downstream 100 bases:

>100_bases
ATTTAGGTTGCCGTATGACTCCTTTTCATCACCTAATAATATTACTATTCCAACGTTACCATTGTCAGAATTAGAAGGGT
AAAGCTCTTTAAAATTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MFGQNPKRSILNGDGTQLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACNFCDTEFEDFDLVDIDKILNKVESLALNSK
NEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLYRSLPKEVSIICSPKVGKTGYSKIREDLLPKISAVKFI
VAKNILEYSLIPEVGQTSYNIPVFIQPMDQNNQRLNGENNELAVKLALESGARLSLQTHKFLNIP

Sequences:

>Translated_225_residues
MFGQNPKRSILNGDGTQLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACNFCDTEFEDFDLVDIDKILNKVESLALNSK
NEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLYRSLPKEVSIICSPKVGKTGYSKIREDLLPKISAVKFI
VAKNILEYSLIPEVGQTSYNIPVFIQPMDQNNQRLNGENNELAVKLALESGARLSLQTHKFLNIP
>Mature_225_residues
MFGQNPKRSILNGDGTQLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACNFCDTEFEDFDLVDIDKILNKVESLALNSK
NEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNGTLYRSLPKEVSIICSPKVGKTGYSKIREDLLPKISAVKFI
VAKNILEYSLIPEVGQTSYNIPVFIQPMDQNNQRLNGENNELAVKLALESGARLSLQTHKFLNIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189 [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=228, Percent_Identity=30.7017543859649, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25012; Mature: 25012

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQNPKRSILNGDGTQLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACNFCDTEFEDF
CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEECHHHEEEECCCEEEEECCCCCCCCC
DLVDIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNG
CEECHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC
TLYRSLPKEVSIICSPKVGKTGYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYN
EEEECCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
IPVFIQPMDQNNQRLNGENNELAVKLALESGARLSLQTHKFLNIP
CCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCEEECCC
>Mature Secondary Structure
MFGQNPKRSILNGDGTQLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACNFCDTEFEDF
CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEECHHHEEEECCCEEEEECCCCCCCCC
DLVDIDKILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDRDVKVQIETNG
CEECHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC
TLYRSLPKEVSIICSPKVGKTGYSKIREDLLPKISAVKFIVAKNILEYSLIPEVGQTSYN
EEEECCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
IPVFIQPMDQNNQRLNGENNELAVKLALESGARLSLQTHKFLNIP
CCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]