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The map label for this gene is rpoZ

Identifier: 15892805

GI number: 15892805

Start: 828544

End: 828927

Strand: Reverse

Name: rpoZ

Synonym: RC0882

Alternate gene names: 15892805

Gene position: 828927-828544 (Counterclockwise)

Preceding gene: 15892806

Following gene: 15892804

Centisome position: 65.33

GC content: 32.55

Gene sequence:

>384_bases
ATGGCAAGAATTACAGCAGAAGATTGTAATAAAATTATACCGGATAGGTTTCGGCTTGTTGTCCTAGCAACAAGATATGC
TAAATTATTAAATTATAAAGTAGAAACTAATCAAATTAAAAAAGAAAAGCGTGATAAGCCTCCTGTTATCGCATTACGTA
GAATTGCTGCCGGAAAAGTATCGGTAGCTCAGTTAGAACAAGATTTAATAAATAGTCTGCGTACAAGAACTATGATAGAG
CCGCTTGTTAATCAAGATGAATCAGAAGCTGTAGAAGAAAAATTTGAGTATTTACCTGAAGTTTATATCGGGGAAGATTA
TTCTGATTTAGATGATCAAATCTTTATTGATGAGAATGGCGAAGATTATGAAACTGATAAGTAA

Upstream 100 bases:

>100_bases
GTGTGCCTCGCCTTGTGAACTCCTTGCTCTTTTTGAAGTTGATCTGCGTATAGTCGTTTCCTATTTATTTGTAGTATACT
ATTTTTAACGGAGAAAAATT

Downstream 100 bases:

>100_bases
ATGCTTATCGGTGTTGGTACTGATATAGTACAAATTCCTAGAATCGAAAAAATATTACATTTATATCCAGAACTTTTTGC
TAAAAAAATTCTAACTTCAA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVAQLEQDLINSLRTRTMIE
PLVNQDESEAVEEKFEYLPEVYIGEDYSDLDDQIFIDENGEDYETDK

Sequences:

>Translated_127_residues
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVAQLEQDLINSLRTRTMIE
PLVNQDESEAVEEKFEYLPEVYIGEDYSDLDDQIFIDENGEDYETDK
>Mature_126_residues
ARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKVSVAQLEQDLINSLRTRTMIEP
LVNQDESEAVEEKFEYLPEVYIGEDYSDLDDQIFIDENGEDYETDK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_RICAE (C3PP13)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845416.1
- GeneID:   7815605
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0799
- OMA:   NQDESED
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14768; Mature: 14637

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCH
SVAQLEQDLINSLRTRTMIEPLVNQDESEAVEEKFEYLPEVYIGEDYSDLDDQIFIDENG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCCCCCEEEECCCC
EDYETDK
CCCCCCC
>Mature Secondary Structure 
ARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCH
SVAQLEQDLINSLRTRTMIEPLVNQDESEAVEEKFEYLPEVYIGEDYSDLDDQIFIDENG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCCCCCEEEECCCC
EDYETDK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA