Click here to switch to the map view.

The map label for this gene is rimP [H]

Identifier: 15892741

GI number: 15892741

Start: 774589

End: 775074

Strand: Reverse

Name: rimP [H]

Synonym: RC0818

Alternate gene names: 15892741

Gene position: 775074-774589 (Counterclockwise)

Preceding gene: 15892742

Following gene: 15892740

Centisome position: 61.09

GC content: 29.01

Gene sequence:

>486_bases
ATGCAAACTATTGAACAACAAATAGCAAACGTAATAGAAGAATCCTTGACAGATATGGGATTTGAGTTAGTTCTTGTGAA
GTTTAAAGGTGTTAACCCTAAAGTAGTCGAGATATTGATTGATAGCTTAAACAGCGAAAAAATATCTGTGGAAGATTGTA
CTAAAGCAAGTAGGACTATCTCCGCTATTCTAGATGTTGAAGATTTAATAGAAGCTGCATATTCTTTAGAGGTAGCATCA
AGCGGTCTTGAACGTCCGTTAGTAAAGTTTGAAAATTATAATAGATTTTTAGAAAGAGAAGTTAAAATCAAACTTAAAGA
ATTATTGAACGGCAAGACTCGTTATCAGGGTAAAATAATTAAAGCCGAAAATAATAAAATATATTTAAAATGTGAAGAAC
AAGAAGTACTAATTGATTATGATTTAATTAAAAATGCTAATCTAGTTTTAACTGAAGAAGTATTTAAAAAATTGCTAAAG
CAATAA

Upstream 100 bases:

>100_bases
TGCTTATATATTCTAATTAGTGTATTTTCGTTACGGATAAGCATTATAAAAATTATAGATAGGTGGGTTTATCCCACCTT
TTTTGTTATAAATATCAAAT

Downstream 100 bases:

>100_bases
GAGATAATGTATGTCTAATATAGGTAATGTAGAAATTTTACAAATTATAGATTCTGTAGCTCGTGAGAAAGGAATATCAA
AAGAAATTTTGATTTCAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MQTIEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAILDVEDLIEAAYSLEVAS
SGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKIYLKCEEQEVLIDYDLIKNANLVLTEEVFKKLLK
Q

Sequences:

>Translated_161_residues
MQTIEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAILDVEDLIEAAYSLEVAS
SGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKIYLKCEEQEVLIDYDLIKNANLVLTEEVFKKLLK
Q
>Mature_161_residues
MQTIEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAILDVEDLIEAAYSLEVAS
SGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKIIKAENNKIYLKCEEQEVLIDYDLIKNANLVLTEEVFKKLLK
Q

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=149, Percent_Identity=37.5838926174497, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 18454; Mature: 18454

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTI
CCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHCCCCEECHHHHHHHHHHH
SAILDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKII
HHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEE
KAENNKIYLKCEEQEVLIDYDLIKNANLVLTEEVFKKLLKQ
EECCCEEEEEECCCEEEEEHHHHCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MQTIEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTI
CCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHCCCCEECHHHHHHHHHHH
SAILDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKLKELLNGKTRYQGKII
HHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEE
KAENNKIYLKCEEQEVLIDYDLIKNANLVLTEEVFKKLLKQ
EECCCEEEEEECCCEEEEEHHHHCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA