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The map label for this gene is srpC [H]

Identifier: 15892495

GI number: 15892495

Start: 561639

End: 562016

Strand: Reverse

Name: srpC [H]

Synonym: RC0572

Alternate gene names: 15892495

Gene position: 562016-561639 (Counterclockwise)

Preceding gene: 15892496

Following gene: 15892494

Centisome position: 44.3

GC content: 34.13

Gene sequence:

>378_bases
TTGCCGCCTTTAAAACAACAAAGACATGAGCAGGAAACCACTTTAAAAATTTTAGTAGGTAGAATTCCTGAAAATATAGT
AAACGGCTTAATTTATCGTAATAAACCAATAGATTACTTCCCTGCTCTACCGGTATTACCTAAAATATTACCATCAGAGC
TTTTAGAGCAAAGACCAGATATTAAAGCAGCAGAGCAGAATTTACTAGCAGCAGATGTAAACTTAAAAACAATAAAAGCT
ACTTATTTTCCACAAATTTCTTTAACAGGCTTATTAGGATTCGGTAGCAATAAACTTAATACTCTGTTTACTAACTCAGC
TGAGACTTGGCAGGTAGACGGCAACATAGCAGGACCTATTTTTGATTTTGGCAAATAA

Upstream 100 bases:

>100_bases
GGAAATTTATAAATTAAATCAGAAATTATATAATCTTGGCGTAGGTGATTTAATATCGGTTAGTGAAGCTGCTTCCGAGC
TTGCACTTACTAAGTTATCA

Downstream 100 bases:

>100_bases
CAATGCTTAAAACAATAATGCGGCATTTGATATTGATAACATTACTAGTACTAAATAGTAATATTAGTGGTTTGGGTAAT
AAAACATCATAATAAAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MPPLKQQRHEQETTLKILVGRIPENIVNGLIYRNKPIDYFPALPVLPKILPSELLEQRPDIKAAEQNLLAADVNLKTIKA
TYFPQISLTGLLGFGSNKLNTLFTNSAETWQVDGNIAGPIFDFGK

Sequences:

>Translated_125_residues
MPPLKQQRHEQETTLKILVGRIPENIVNGLIYRNKPIDYFPALPVLPKILPSELLEQRPDIKAAEQNLLAADVNLKTIKA
TYFPQISLTGLLGFGSNKLNTLFTNSAETWQVDGNIAGPIFDFGK
>Mature_124_residues
PPLKQQRHEQETTLKILVGRIPENIVNGLIYRNKPIDYFPALPVLPKILPSELLEQRPDIKAAEQNLLAADVNLKTIKAT
YFPQISLTGLLGFGSNKLNTLFTNSAETWQVDGNIAGPIFDFGK

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=80, Percent_Identity=42.5, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 13941; Mature: 13810

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLKQQRHEQETTLKILVGRIPENIVNGLIYRNKPIDYFPALPVLPKILPSELLEQRPD
CCCCHHHHHHHHHHHHHHHHHCCHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
IKAAEQNLLAADVNLKTIKATYFPQISLTGLLGFGSNKLNTLFTNSAETWQVDGNIAGPI
CCHHHCCEEEECCCEEEEEEECCCCEEEEEEEECCCCCCEEEECCCCCEEEECCCCCCCC
FDFGK
CCCCC
>Mature Secondary Structure 
PPLKQQRHEQETTLKILVGRIPENIVNGLIYRNKPIDYFPALPVLPKILPSELLEQRPD
CCCHHHHHHHHHHHHHHHHHCCHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
IKAAEQNLLAADVNLKTIKATYFPQISLTGLLGFGSNKLNTLFTNSAETWQVDGNIAGPI
CCHHHCCEEEECCCEEEEEEECCCCEEEEEEEECCCCCCEEEECCCCCEEEECCCCCCCC
FDFGK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]