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The map label for this gene is aco1

Identifier: 15891985

GI number: 15891985

Start: 54469

End: 55662

Strand: Reverse

Name: aco1

Synonym: RC0062

Alternate gene names: NA

Gene position: 55662-54469 (Counterclockwise)

Preceding gene: 15891986

Following gene: 15891984

Centisome position: 4.39

GC content: 31.32

Gene sequence:

>1194_bases
ATGTTAAGTAAACTAAATAAGCCCGCTTTATTTGCTTTAATATTTTATCCTATTTTTATTATATCTCTTGTAGTTAAATA
TTCGTTTGATTATGGAATAGGGCTAACTGAAGTTATTTTTATAATTGCTAGTTATTATATTAATAATATTACCGTTGGGA
TCGGTCTGCATAGGTTATGGTCTCATAATGCCTATAAAATAAATAAATATGCCGAGTTTGTCTTAATTATGCTGTCTGCA
GGAACATTACAAGGACCAGCTTTATCTTGGGCATCGAATCATTATAAACATCATAGATATACGGATCAAGACCAAGATCC
ACATACTCCTTTAAAATTTGATAATAAATTTTTAGGCTTTATGTGGTCTCATATAGGATGGATGCTAGTCGGAAGCGGTA
GCTATAAGTCTATTGATCGCATTACTTGGGCTAAGCACGGGAAAAACAATTTATTAAAATGGCAGCTAAAATATTATTGG
CAAATAGCAGCTTTTATGAATATTGTCGTGCCTTTATTTATCGGTTACTTAGTCGGTGGTACTATGCAATCGGCATATGC
AGGATTTTTATTTATGGGGCTCGGTAGATTCCTACAGCAGCAAGCAACCTTCTGCGTTAATTCTTTATGCCACTTTGCCG
GTAGTAAAAAATATTACAAAGGCACTGCTGGAGATATTTGGTGGATGGCATTATTCTTACTCGGTGAAAATTGGCATAAT
TACCATCATGCTTTTCCTTCAGATTATCGTAACGGTGCAAAATGGTATCATTTGGACGTTCACAAATGGATAATATTTTT
AATGAGTAAAATCGGTTTAGCTTCAGAACTTGAACGTACTACAAAAGTACGTATACAGGCAAAAATGCAAGAAACTTTAA
ACTATCTTAGTGAAAAACAAAAGCAAAAATTGACTTTAATGCAAACTAAAATAGATCATTTATTAGAAAATCTATGCTTA
AAAATTAAAGAGCTTGAAGAATCATCTATTACTATCAAAGAACAATTTAAAAAATCTTTTGTAGAAATACAAGAATCACT
TAAAAATTTAGCGGAGCAAGTAAGTGCTGCAACGCAAATAACAGAAAAATCTTCAGAAAAACTATTAAAAATAGTTAATA
AAAAAATTATTGATGCCGAACAATCTATTTATAAGCTGTATAATCAATTAAATACCTTAAAGGTATCTCATTAG

Upstream 100 bases:

>100_bases
AAAATTTTCTTTGTATTTATGCATTAAGTATGTATAATATAATTAAGATTTTATTCGTTGCCGATTTATATATATTTTAT
AACTAAAAACTGTAAATTTT

Downstream 100 bases:

>100_bases
GCATTATTAAATAAAGATAGATATCGTGATTACAAGCGGGTGTTGGTGTTGTCACAATGACGCAAACTATCATTTTTTAC
TTAACAACGCCTCTAATTAG

Product: acyl-CoA desaturase 1

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Fatty Acid Desaturase Subfamily; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Family Proteiin; Fatty Acid Desaturase Domain Protein; Stearoyl-CoA Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Fatty Acid Desaturase Family Protein; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Fatty Acid-CoA Desaturase; Membrane-Bound Fatty Acid Desaturase; Acyl-Coa Desaturase; Long Chain Acyl-CoA Desaturase; Fatty Acid Desaturase Protein; Fatty-Acid Desaturase-Like Protein; Eucaryotic Stearoyl-CoA 9-Desaturase; Stearoyl/Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MLSKLNKPALFALIFYPIFIISLVVKYSFDYGIGLTEVIFIIASYYINNITVGIGLHRLWSHNAYKINKYAEFVLIMLSA
GTLQGPALSWASNHYKHHRYTDQDQDPHTPLKFDNKFLGFMWSHIGWMLVGSGSYKSIDRITWAKHGKNNLLKWQLKYYW
QIAAFMNIVVPLFIGYLVGGTMQSAYAGFLFMGLGRFLQQQATFCVNSLCHFAGSKKYYKGTAGDIWWMALFLLGENWHN
YHHAFPSDYRNGAKWYHLDVHKWIIFLMSKIGLASELERTTKVRIQAKMQETLNYLSEKQKQKLTLMQTKIDHLLENLCL
KIKELEESSITIKEQFKKSFVEIQESLKNLAEQVSAATQITEKSSEKLLKIVNKKIIDAEQSIYKLYNQLNTLKVSH

Sequences:

>Translated_397_residues
MLSKLNKPALFALIFYPIFIISLVVKYSFDYGIGLTEVIFIIASYYINNITVGIGLHRLWSHNAYKINKYAEFVLIMLSA
GTLQGPALSWASNHYKHHRYTDQDQDPHTPLKFDNKFLGFMWSHIGWMLVGSGSYKSIDRITWAKHGKNNLLKWQLKYYW
QIAAFMNIVVPLFIGYLVGGTMQSAYAGFLFMGLGRFLQQQATFCVNSLCHFAGSKKYYKGTAGDIWWMALFLLGENWHN
YHHAFPSDYRNGAKWYHLDVHKWIIFLMSKIGLASELERTTKVRIQAKMQETLNYLSEKQKQKLTLMQTKIDHLLENLCL
KIKELEESSITIKEQFKKSFVEIQESLKNLAEQVSAATQITEKSSEKLLKIVNKKIIDAEQSIYKLYNQLNTLKVSH
>Mature_397_residues
MLSKLNKPALFALIFYPIFIISLVVKYSFDYGIGLTEVIFIIASYYINNITVGIGLHRLWSHNAYKINKYAEFVLIMLSA
GTLQGPALSWASNHYKHHRYTDQDQDPHTPLKFDNKFLGFMWSHIGWMLVGSGSYKSIDRITWAKHGKNNLLKWQLKYYW
QIAAFMNIVVPLFIGYLVGGTMQSAYAGFLFMGLGRFLQQQATFCVNSLCHFAGSKKYYKGTAGDIWWMALFLLGENWHN
YHHAFPSDYRNGAKWYHLDVHKWIIFLMSKIGLASELERTTKVRIQAKMQETLNYLSEKQKQKLTLMQTKIDHLLENLCL
KIKELEESSITIKEQFKKSFVEIQESLKNLAEQVSAATQITEKSSEKLLKIVNKKIIDAEQSIYKLYNQLNTLKVSH

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=257, Percent_Identity=29.5719844357977, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI148596961, Length=257, Percent_Identity=29.1828793774319, Blast_Score=112, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17561774, Length=295, Percent_Identity=27.1186440677966, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17561776, Length=269, Percent_Identity=28.2527881040892, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17540878, Length=218, Percent_Identity=31.1926605504587, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321383, Length=259, Percent_Identity=33.976833976834, Blast_Score=150, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24646295, Length=264, Percent_Identity=31.0606060606061, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24646500, Length=266, Percent_Identity=28.1954887218045, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24646303, Length=257, Percent_Identity=29.1828793774319, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24646299, Length=257, Percent_Identity=29.1828793774319, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24646305, Length=257, Percent_Identity=29.1828793774319, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24646301, Length=257, Percent_Identity=29.1828793774319, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24646297, Length=257, Percent_Identity=29.1828793774319, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI21358573, Length=275, Percent_Identity=26.9090909090909, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24662393, Length=263, Percent_Identity=27.7566539923954, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21358571, Length=259, Percent_Identity=27.4131274131274, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46058; Mature: 46058

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA