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The map label for this gene is ipt

Identifier: 41223315

GI number: 41223315

Start: 19337

End: 20059

Strand: Direct

Name: ipt

Synonym: Atu6012

Alternate gene names: 41223315

Gene position: 19337-20059 (Clockwise)

Preceding gene: 16119823

Following gene: 16119825

Centisome position: 9.03

GC content: 50.48

Gene sequence:

>723_bases
ATGGATCTGCGTCTAATTTTCGGTCCAACTTGCACAGGAAAGACGTCGACCGCGGTAGCTCTTGCCCAGCAGACTGGGCT
TCCAGTCCTTTCGCTCGATCGGGTCCAATGTTGTCCTCAGCTGTCAACCGGAAGCGGACGACCAACAGTGGAAGAACTGA
AAGGAACGAGCCGTCTATACCTTGATGATCGGCCTCTGGTGAAGGGTATCATCGCAGCCAAGCAAGCTCATGAAAGGCTG
ATGGGGGAGGTGTATAATTATGAGGCCCACGGCGGGCTTATTCTTGAGGGAGGATCTATCTCGTTGCTCAAGTGCATGGC
GCAAAGCAGTTATTGGAGTGCGGATTTTCGTTGGCATATTATTCGCCACGAGTTAGCAGACGAGGAGACCTTCATGAACG
TGGCCAAGGCCAGAGTTAAGCAGATGTTACGCCCTGCTGCAGGCCTTTCTATTATCCAAGAGTTGGTTGATCTTTGGAAA
GAGCCTCGGCTGAGGCCCATACTGAAAGAGATCGATGGATATCGATATGCCATGTTGTTTGCTAGCCAGAACCAGATCAC
ATCCGATATGCTATTGCAGCTTGACGCAGATATGGAGGATAAGTTGATTCATGGGATCGCTCAGGAGTATCTCATCCATG
CACGCCGACAAGAACAGAAATTCCCTCGAGTTAACGCAGCCGCTTACGACGGATTCGAAGGTCATCCATTCGGAATGTAT
TAG

Upstream 100 bases:

>100_bases
TCTTCAATAAGGAATCTCGAGGAGGCAATATAACCGCCTCTGGTAGTACACTTCTCTAATCCAAAAAGTCAATTTGTATT
CAAGATACCGCAAAAAACTT

Downstream 100 bases:

>100_bases
TTTGCACCAGCTCCGCGTCACACCTGTCTTCATTTGAATAAGATGTTCGCAATTGTTTTTAGCTTTGTCTTGTTGTGGCA
GGGCGGCAAGTGCTTCAGAC

Product: isopentenyl transferase

Products: NA

Alternate protein names: Dimethylallyl transferase

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MDLRLIFGPTCTGKTSTAVALAQQTGLPVLSLDRVQCCPQLSTGSGRPTVEELKGTSRLYLDDRPLVKGIIAAKQAHERL
MGEVYNYEAHGGLILEGGSISLLKCMAQSSYWSADFRWHIIRHELADEETFMNVAKARVKQMLRPAAGLSIIQELVDLWK
EPRLRPILKEIDGYRYAMLFASQNQITSDMLLQLDADMEDKLIHGIAQEYLIHARRQEQKFPRVNAAAYDGFEGHPFGMY

Sequences:

>Translated_240_residues
MDLRLIFGPTCTGKTSTAVALAQQTGLPVLSLDRVQCCPQLSTGSGRPTVEELKGTSRLYLDDRPLVKGIIAAKQAHERL
MGEVYNYEAHGGLILEGGSISLLKCMAQSSYWSADFRWHIIRHELADEETFMNVAKARVKQMLRPAAGLSIIQELVDLWK
EPRLRPILKEIDGYRYAMLFASQNQITSDMLLQLDADMEDKLIHGIAQEYLIHARRQEQKFPRVNAAAYDGFEGHPFGMY
>Mature_240_residues
MDLRLIFGPTCTGKTSTAVALAQQTGLPVLSLDRVQCCPQLSTGSGRPTVEELKGTSRLYLDDRPLVKGIIAAKQAHERL
MGEVYNYEAHGGLILEGGSISLLKCMAQSSYWSADFRWHIIRHELADEETFMNVAKARVKQMLRPAAGLSIIQELVDLWK
EPRLRPILKEIDGYRYAMLFASQNQITSDMLLQLDADMEDKLIHGIAQEYLIHARRQEQKFPRVNAAAYDGFEGHPFGMY

Specific function: Involved in the biosynthesis of cytokinin phytohormones

COG id: COG0324

COG function: function code J; tRNA delta(2)-isopentenylpyrophosphate transferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isopentenyl transferase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IPT_AGRT5 (P0A3L5)

Other databases:

- EMBL:   AE007871
- PIR:   AB3229
- RefSeq:   NP_396529.2
- ProteinModelPortal:   P0A3L5
- SMR:   P0A3L5
- STRING:   P0A3L5
- GeneID:   1137335
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6012
- eggNOG:   COG0324
- HOGENOM:   HBG301744
- ProtClustDB:   CLSK2298627
- BioCyc:   ATUM176299-1:ATU6012-MONOMER
- InterPro:   IPR002648
- PIRSF:   PIRSF000507

Pfam domain/function: PF01745 IPT

EC number: NA

Molecular weight: Translated: 27026; Mature: 27026

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRLIFGPTCTGKTSTAVALAQQTGLPVLSLDRVQCCPQLSTGSGRPTVEELKGTSRLY
CCEEEEECCCCCCCCHHHHHHHHHCCCCEEECHHHHHCCCCCCCCCCCHHHHHCCCCEEE
LDDRPLVKGIIAAKQAHERLMGEVYNYEAHGGLILEGGSISLLKCMAQSSYWSADFRWHI
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEE
IRHELADEETFMNVAKARVKQMLRPAAGLSIIQELVDLWKEPRLRPILKEIDGYRYAMLF
HHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEE
ASQNQITSDMLLQLDADMEDKLIHGIAQEYLIHARRQEQKFPRVNAAAYDGFEGHPFGMY
ECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDLRLIFGPTCTGKTSTAVALAQQTGLPVLSLDRVQCCPQLSTGSGRPTVEELKGTSRLY
CCEEEEECCCCCCCCHHHHHHHHHCCCCEEECHHHHHCCCCCCCCCCCHHHHHCCCCEEE
LDDRPLVKGIIAAKQAHERLMGEVYNYEAHGGLILEGGSISLLKCMAQSSYWSADFRWHI
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCEEEE
IRHELADEETFMNVAKARVKQMLRPAAGLSIIQELVDLWKEPRLRPILKEIDGYRYAMLF
HHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEE
ASQNQITSDMLLQLDADMEDKLIHGIAQEYLIHARRQEQKFPRVNAAAYDGFEGHPFGMY
ECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194