Click here to switch to the map view.

The map label for this gene is traF

Identifier: 16119946

GI number: 16119946

Start: 147286

End: 147816

Strand: Direct

Name: traF

Synonym: Atu6128

Alternate gene names: 16119946

Gene position: 147286-147816 (Clockwise)

Preceding gene: 159161979

Following gene: 229007180

Centisome position: 68.75

GC content: 62.71

Gene sequence:

>531_bases
ATGAGCAAACGCGCTGTCATCCGGTTTCTCGGTGTCGCAGGCCTCGTCTTGAGCGGCGCCACCGTCATGGGGCTCATCGG
TGGTTATCGAGTGAACGTCACGCCGAGCGAACCCCTTGGGCTCTGGCGTGTGGAAAAGCTCCGACGCCCGGTTCAGTCCG
GCGATCTGGTGTTTGTCTGCCCGCCGCACAACGCCTTCTTCGAGGAAGCCTGGCTACGCGGCTATCTCCGTTCCGGGCTC
TGCCCAGGTTGGTTCGCGCCGCTCATAAAGTCCGTTCTGGCGCTTCCCGGTCAGCGCGTCGAAATCGCCGATCGGATTGT
CATCGACGGTCATCCCGTATCGGCTTCCACTGTCAGCGCGACGGACAGCGAGGGCAGGGCGATCGCGCCCTTCGCCGGCG
GCGTCGTGCCGCCAGGATTTCTATTTCTCCATTCTTCCTTTGCGAGTTCCTATGATTCACGATACTTCGGCCCGATCCCG
GACAGCGGTCTTCTCGGCCTGGCGCGGCCGGTGTTCACGTTTGACCCGTGA

Upstream 100 bases:

>100_bases
GCACGGCCCAGCAGCTCGCCGCCCACGAGCGCACCGTGCAGTCGCTGAAACAGGCCGAGGAATTGCGGCAGACGTTGCGC
CAGGCACCGGTGCTGAAACA

Downstream 100 bases:

>100_bases
CCGCTGGCGTGTGGCGCTCCTGATCCTGCTTTCGATCGCCGTCGGAGCGGTCGGCTGGAGCGGCGAGGCCCTCCTTCTTC
CGACAGCCATGCTCTTTCCG

Product: conjugal transfer pilin processing protease TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSKRAVIRFLGVAGLVLSGATVMGLIGGYRVNVTPSEPLGLWRVEKLRRPVQSGDLVFVCPPHNAFFEEAWLRGYLRSGL
CPGWFAPLIKSVLALPGQRVEIADRIVIDGHPVSASTVSATDSEGRAIAPFAGGVVPPGFLFLHSSFASSYDSRYFGPIP
DSGLLGLARPVFTFDP

Sequences:

>Translated_176_residues
MSKRAVIRFLGVAGLVLSGATVMGLIGGYRVNVTPSEPLGLWRVEKLRRPVQSGDLVFVCPPHNAFFEEAWLRGYLRSGL
CPGWFAPLIKSVLALPGQRVEIADRIVIDGHPVSASTVSATDSEGRAIAPFAGGVVPPGFLFLHSSFASSYDSRYFGPIP
DSGLLGLARPVFTFDP
>Mature_175_residues
SKRAVIRFLGVAGLVLSGATVMGLIGGYRVNVTPSEPLGLWRVEKLRRPVQSGDLVFVCPPHNAFFEEAWLRGYLRSGLC
PGWFAPLIKSVLALPGQRVEIADRIVIDGHPVSASTVSATDSEGRAIAPFAGGVVPPGFLFLHSSFASSYDSRYFGPIPD
SGLLGLARPVFTFDP

Specific function: Involved in conjugal transfer of the plasmid (Potential)

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAF_AGRT5 (Q44350)

Other databases:

- EMBL:   AF010180
- EMBL:   AE007871
- PIR:   AF3243
- PIR:   T03420
- RefSeq:   NP_396651.1
- ProteinModelPortal:   Q44350
- SMR:   Q44350
- STRING:   Q44350
- MEROPS:   S26.014
- GeneID:   1137451
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6128
- eggNOG:   COG4959
- HOGENOM:   HBG680055
- OMA:   SSYDSRY
- ProtClustDB:   PRK13838
- BioCyc:   ATUM176299-1:ATU6128-MONOMER
- GO:   GO:0000746
- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139
- Gene3D:   G3DSA:2.10.109.10
- TIGRFAMs:   TIGR02771

Pfam domain/function: PF10502 Peptidase_S26; SSF51306 Pept_S24_S26_C

EC number: NA

Molecular weight: Translated: 18855; Mature: 18724

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRAVIRFLGVAGLVLSGATVMGLIGGYRVNVTPSEPLGLWRVEKLRRPVQSGDLVFVC
CCCHHHHHHHHHHHHHHHCHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEE
PPHNAFFEEAWLRGYLRSGLCPGWFAPLIKSVLALPGQRVEIADRIVIDGHPVSASTVSA
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEC
TDSEGRAIAPFAGGVVPPGFLFLHSSFASSYDSRYFGPIPDSGLLGLARPVFTFDP
CCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEEECCC
>Mature Secondary Structure 
SKRAVIRFLGVAGLVLSGATVMGLIGGYRVNVTPSEPLGLWRVEKLRRPVQSGDLVFVC
CCHHHHHHHHHHHHHHHCHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEE
PPHNAFFEEAWLRGYLRSGLCPGWFAPLIKSVLALPGQRVEIADRIVIDGHPVSASTVSA
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEC
TDSEGRAIAPFAGGVVPPGFLFLHSSFASSYDSRYFGPIPDSGLLGLARPVFTFDP
CCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194