| Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
|---|---|
| Accession | NC_003065 |
| Length | 214,233 |
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The map label for this gene is tms1 [H]
Identifier: 16119823
GI number: 16119823
Start: 16372
End: 18639
Strand: Direct
Name: tms1 [H]
Synonym: Atu6011
Alternate gene names: 16119823
Gene position: 16372-18639 (Clockwise)
Preceding gene: 16119821
Following gene: 41223315
Centisome position: 7.64
GC content: 49.91
Gene sequence:
>2268_bases ATGTCAGCTTCAGCTCTCCTTGATAACCAGTGCGATCATTTCTCTACCAAAATGGTGGATCTGATAATGGTCGATAAGGC TGATGAATTGGACCGCAGGGTTTCCGATGCCTTCTCAGAACGTGAAGCTTCTAGGGGAAGGAGGATTACTCAAATCTCCG GCGAGTGCAGCGCTGGGTTAGCTTGCAAAAGGCTGGCCGACGGTCGCTTTCCCGAGATCTCAGCTGGTGAGAAGGTAGCA GCCCTCTCCGCTTACATCTATGTTGGCAAGGAAATTCTGGGGCGGATACTTGAATCGGAACCTTGGGCGCGAGCAAGAGT GAGTGGTCTCGTTGCCATCGACCTTGCACCATTTTGTATGGATTTCTCCGAAGCACAACTTCTCCAAACCCTGTTTTTGC TGAGCGGTAAAAGATGTGCATCCAGCGATCTTAGTCATTTCGTGGCCATTTCAATCTCTAAGACTGCCCGCTCCCGAACC CTGCAAATGCCGCCTTACGAGAAAGGCACGACGAAACGCGTTACCGGGTTTACCCTGACCCTTGAAGAGGCCGTACCATT TGACATGGTAGCTTATGGTCGAAACCTGATGCTGAAGGCTTCGGCAGGTTCCTTTCCAACAATTGACTTGCTCTATGACT ACAGATCGTTTTTTGACCAATGTTCCGATAGTGGACGGATCGGCTTCTTTCCGGAAGATGTTCCTAAGCCAAAAGTGGCG ATCATTGGCGCTGGCATTTCCGGACTCGTGGTGGCAAGCGAACTGCTTCATGCTGGTGTAGACGATGTTACAATATATGA AGCAAGTGATCGGGTTGGAGGCAAGCTTTGGTCACATGCTTTCAAGGACGCTCCCAGCGTGGTGGCCGAAATGGGGGCGA TGCGATTTCCTCCTGCTGCATCGTGCTTGTTTTTCTTCCTCGAGCGGTACGGCCTGTCTTCGATGAGGCCGTTCCCAAAT CCCGGCACAGTCGACACTAACTTGGTCTACCAAGGCCTCCGATACATGTGGAAAGCCGGGCAGCAGCCACCGAAGCTGTT CCATCGCGTTTACAGCGGTTGGCGTGCGTTCTTGAAGGACGGTTTCCATGAGGGAGATATTGTGTTGGCTTCGCCTGTTG CTATTACTCAAGCCTTGAAATCAGGAGACATTAGGCGGGCTCATGACTCCTGGCAAACTTGGCTGAACCGTTTCGGGAGG GAGTCCTTCTCTTCAGCGATAGAGAGGATCTTTCTGGGCACGCATCCTCCTGGTGGTGAAACATGGAGTTTCCCTCATGA TTGGGACCTATTCAAGCTAATGGGAATAGGATCTGGCGGGTTTGGTCCAGTTTTTGAAAGCGGGTTTATTGAGATCCTTC GCTTGGTCATAAACGGATATGAAGAAAATCAGCGGATGTGCTCTGAAGGAATCTCAGAACTTCCACGTCGAATAGCCACT CAAGTGGTTAACGGTGTGTCTGTAAGCCAGCGTATACGCCATGTTCAAGTCAGGGCGATTGAGAAAGAAAAGACAAAAAT AAAGATAAGGCTTAAGAGCGGGATATCTGAACTTTATGATAAGGTGGTGGTTACATCTGGACTCGCAAATATCCAACTCA GGCATTGTCTGACATGCGATACCACCATTTTTCGTGCACCAGTGAACCAAGCGGTTGATAACAGCCATATGACAGGCTCG TCAAAACTCTTCCTGCTGACTGAACGAAAATTTTGGTTAGACCATATCCTCCCGTCCTGTGTCCTCATGGACGGGATCGC AAAAGCAGTGTACTGCCTGGACTATGAGCCGCAGGATCCGAATGGTAAAGGTCTGGTGCTCATCAGTTATACATGGGAGG ACGACTCCCACAAGCTGTTGGCGGTTCCCGACAAAAAAGAGCGATTCTGTCTGCTGCGGGACGCAATTTCGAGATCTTTC CCGGCGTTTGCCCAGCATCTAGTTCCCGCCTGCGCTGATTACGACCAAAATGTTGTTCAACATGATTGGCTTACAGACGA GAATGCCGGGGGAGCTTTCAAACTCAACCGGCGTGGCGAGGATTTTTATTCTGAAGAACTTTTCTTTCAAGCGCTGGACA TGACTAATGATACCGGAGTTTACTTGGCGGGTTGCAGTTGTTCCTTCACCGGTGGATGGGTGGAGGGCGCTATTCAGACC GCGTGTAACGCCGTCTGTGCAATTATCCACAATTGTGGAGGTATTTTGGCAAAGGACAATCCTCTCGAACACTCTTGGAA GAGATATAACTACCGCAATAGAAATTAA
Upstream 100 bases:
>100_bases CCATTGGGATGTCAATGAACAGTATGTTCCCCGATTTTCAACTTAAATAGAAACGGTTGATGTCGTTAGTTATCTACACA AAGACCAATCTTTTCTAGCA
Downstream 100 bases:
>100_bases TCTACGGATCCTGTTACAAGTATTGCACGTTTTATAAATTGCATATTAATGCAATCTTGATTTTTAACAACGAAGGTAAT GGCGTAAAATAAAAAATGTA
Product: tryptophan 2-monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 754
Protein sequence:
>755_residues MSASALLDNQCDHFSTKMVDLIMVDKADELDRRVSDAFSEREASRGRRITQISGECSAGLACKRLADGRFPEISAGEKVA ALSAYIYVGKEILGRILESEPWARARVSGLVAIDLAPFCMDFSEAQLLQTLFLLSGKRCASSDLSHFVAISISKTARSRT LQMPPYEKGTTKRVTGFTLTLEEAVPFDMVAYGRNLMLKASAGSFPTIDLLYDYRSFFDQCSDSGRIGFFPEDVPKPKVA IIGAGISGLVVASELLHAGVDDVTIYEASDRVGGKLWSHAFKDAPSVVAEMGAMRFPPAASCLFFFLERYGLSSMRPFPN PGTVDTNLVYQGLRYMWKAGQQPPKLFHRVYSGWRAFLKDGFHEGDIVLASPVAITQALKSGDIRRAHDSWQTWLNRFGR ESFSSAIERIFLGTHPPGGETWSFPHDWDLFKLMGIGSGGFGPVFESGFIEILRLVINGYEENQRMCSEGISELPRRIAT QVVNGVSVSQRIRHVQVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQLRHCLTCDTTIFRAPVNQAVDNSHMTGS SKLFLLTERKFWLDHILPSCVLMDGIAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRSF PAFAQHLVPACADYDQNVVQHDWLTDENAGGAFKLNRRGEDFYSEELFFQALDMTNDTGVYLAGCSCSFTGGWVEGAIQT ACNAVCAIIHNCGGILAKDNPLEHSWKRYNYRNRN
Sequences:
>Translated_755_residues MSASALLDNQCDHFSTKMVDLIMVDKADELDRRVSDAFSEREASRGRRITQISGECSAGLACKRLADGRFPEISAGEKVA ALSAYIYVGKEILGRILESEPWARARVSGLVAIDLAPFCMDFSEAQLLQTLFLLSGKRCASSDLSHFVAISISKTARSRT LQMPPYEKGTTKRVTGFTLTLEEAVPFDMVAYGRNLMLKASAGSFPTIDLLYDYRSFFDQCSDSGRIGFFPEDVPKPKVA IIGAGISGLVVASELLHAGVDDVTIYEASDRVGGKLWSHAFKDAPSVVAEMGAMRFPPAASCLFFFLERYGLSSMRPFPN PGTVDTNLVYQGLRYMWKAGQQPPKLFHRVYSGWRAFLKDGFHEGDIVLASPVAITQALKSGDIRRAHDSWQTWLNRFGR ESFSSAIERIFLGTHPPGGETWSFPHDWDLFKLMGIGSGGFGPVFESGFIEILRLVINGYEENQRMCSEGISELPRRIAT QVVNGVSVSQRIRHVQVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQLRHCLTCDTTIFRAPVNQAVDNSHMTGS SKLFLLTERKFWLDHILPSCVLMDGIAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRSF PAFAQHLVPACADYDQNVVQHDWLTDENAGGAFKLNRRGEDFYSEELFFQALDMTNDTGVYLAGCSCSFTGGWVEGAIQT ACNAVCAIIHNCGGILAKDNPLEHSWKRYNYRNRN >Mature_754_residues SASALLDNQCDHFSTKMVDLIMVDKADELDRRVSDAFSEREASRGRRITQISGECSAGLACKRLADGRFPEISAGEKVAA LSAYIYVGKEILGRILESEPWARARVSGLVAIDLAPFCMDFSEAQLLQTLFLLSGKRCASSDLSHFVAISISKTARSRTL QMPPYEKGTTKRVTGFTLTLEEAVPFDMVAYGRNLMLKASAGSFPTIDLLYDYRSFFDQCSDSGRIGFFPEDVPKPKVAI IGAGISGLVVASELLHAGVDDVTIYEASDRVGGKLWSHAFKDAPSVVAEMGAMRFPPAASCLFFFLERYGLSSMRPFPNP GTVDTNLVYQGLRYMWKAGQQPPKLFHRVYSGWRAFLKDGFHEGDIVLASPVAITQALKSGDIRRAHDSWQTWLNRFGRE SFSSAIERIFLGTHPPGGETWSFPHDWDLFKLMGIGSGGFGPVFESGFIEILRLVINGYEENQRMCSEGISELPRRIATQ VVNGVSVSQRIRHVQVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQLRHCLTCDTTIFRAPVNQAVDNSHMTGSS KLFLLTERKFWLDHILPSCVLMDGIAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRSFP AFAQHLVPACADYDQNVVQHDWLTDENAGGAFKLNRRGEDFYSEELFFQALDMTNDTGVYLAGCSCSFTGGWVEGAIQTA CNAVCAIIHNCGGILAKDNPLEHSWKRYNYRNRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tryptophan 2-monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002937 - InterPro: IPR006064 - InterPro: IPR012142 [H]
Pfam domain/function: PF01593 Amino_oxidase; PF02027 RolB_RolC [H]
EC number: =1.13.12.3 [H]
Molecular weight: Translated: 83964; Mature: 83832
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASALLDNQCDHFSTKMVDLIMVDKADELDRRVSDAFSEREASRGRRITQISGECSAGL CCCCHHHCCCCHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH ACKRLADGRFPEISAGEKVAALSAYIYVGKEILGRILESEPWARARVSGLVAIDLAPFCM HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEHHHHHH DFSEAQLLQTLFLLSGKRCASSDLSHFVAISISKTARSRTLQMPPYEKGTTKRVTGFTLT CHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEEEHHHHHCEECCCCCCCCCCCEEEEEEEE LEEAVPFDMVAYGRNLMLKASAGSFPTIDLLYDYRSFFDQCSDSGRIGFFPEDVPKPKVA ECCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE IIGAGISGLVVASELLHAGVDDVTIYEASDRVGGKLWSHAFKDAPSVVAEMGAMRFPPAA EEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHH SCLFFFLERYGLSSMRPFPNPGTVDTNLVYQGLRYMWKAGQQPPKLFHRVYSGWRAFLKD HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC GFHEGDIVLASPVAITQALKSGDIRRAHDSWQTWLNRFGRESFSSAIERIFLGTHPPGGE CCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC TWSFPHDWDLFKLMGIGSGGFGPVFESGFIEILRLVINGYEENQRMCSEGISELPRRIAT CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH QVVNGVSVSQRIRHVQVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQLRHCLTCD HHHCCCCHHHHHHHHHHHEEECCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEHEEEECC TTIFRAPVNQAVDNSHMTGSSKLFLLTERKFWLDHILPSCVLMDGIAKAVYCLDYEPQDP CHHHHCCHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC NGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRSFPAFAQHLVPACADYDQNVVQ CCCEEEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHH HDWLTDENAGGAFKLNRRGEDFYSEELFFQALDMTNDTGVYLAGCSCSFTGGWVEGAIQT HCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH ACNAVCAIIHNCGGILAKDNPLEHSWKRYNYRNRN HHHHHHHHHHHCCCCEECCCCCCHHHHHCCCCCCC >Mature Secondary Structure SASALLDNQCDHFSTKMVDLIMVDKADELDRRVSDAFSEREASRGRRITQISGECSAGL CCCHHHCCCCHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH ACKRLADGRFPEISAGEKVAALSAYIYVGKEILGRILESEPWARARVSGLVAIDLAPFCM HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEHHHHHH DFSEAQLLQTLFLLSGKRCASSDLSHFVAISISKTARSRTLQMPPYEKGTTKRVTGFTLT CHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEEEHHHHHCEECCCCCCCCCCCEEEEEEEE LEEAVPFDMVAYGRNLMLKASAGSFPTIDLLYDYRSFFDQCSDSGRIGFFPEDVPKPKVA ECCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE IIGAGISGLVVASELLHAGVDDVTIYEASDRVGGKLWSHAFKDAPSVVAEMGAMRFPPAA EEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHH SCLFFFLERYGLSSMRPFPNPGTVDTNLVYQGLRYMWKAGQQPPKLFHRVYSGWRAFLKD HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC GFHEGDIVLASPVAITQALKSGDIRRAHDSWQTWLNRFGRESFSSAIERIFLGTHPPGGE CCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC TWSFPHDWDLFKLMGIGSGGFGPVFESGFIEILRLVINGYEENQRMCSEGISELPRRIAT CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH QVVNGVSVSQRIRHVQVRAIEKEKTKIKIRLKSGISELYDKVVVTSGLANIQLRHCLTCD HHHCCCCHHHHHHHHHHHEEECCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEHEEEECC TTIFRAPVNQAVDNSHMTGSSKLFLLTERKFWLDHILPSCVLMDGIAKAVYCLDYEPQDP CHHHHCCHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC NGKGLVLISYTWEDDSHKLLAVPDKKERFCLLRDAISRSFPAFAQHLVPACADYDQNVVQ CCCEEEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHH HDWLTDENAGGAFKLNRRGEDFYSEELFFQALDMTNDTGVYLAGCSCSFTGGWVEGAIQT HCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH ACNAVCAIIHNCGGILAKDNPLEHSWKRYNYRNRN HHHHHHHHHHHCCCCEECCCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1868204 [H]