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The map label for this gene is accF [H]

Identifier: 159161986

GI number: 159161986

Start: 163670

End: 164470

Strand: Direct

Name: accF [H]

Synonym: Atu6144

Alternate gene names: 159161986

Gene position: 163670-164470 (Clockwise)

Preceding gene: 16119961

Following gene: 41223347

Centisome position: 76.4

GC content: 57.05

Gene sequence:

>801_bases
ATGAACCCTCTCAGAATGACACCGGAGACGATCCGCTTGGGCGGCCATCGCGGCCACAGCGCCGGCGCGCCCGAAAACAC
GCTCGCGGCGTTTCGGAAGGCGTTTGAATTCGGCGGACGTAACGTCACATGCGAAACCGATCTCGGAATTACCCGCGATG
GAGAACTTGTGCTGATTCACGACAAGACCGTCGACCGCACAACAGACGGTCACGGCATCGTTCACGACATGACCTATTCG
GAGTTGTCGAAACTCGACGCAGGGAGTTGGTTCAGTTCGGAGTTTGTCGGAGAGCGTGTGCCGCTACTTAAGGACGCGCT
TCAGCTCGCCCGTGAGCTTGGCATTATCTATCAGCTTGAACTGAAGATCTACGACGCGAACGACGTCTTCTTCCCAAAGT
TGAGGACGCTCATCGATGAATTGGGCTGTGCGGATCTCCTCCAGTTCTCTTCCTTCGACTACGTTCAGCTGAAGGCCGTC
AAGGAAGCAATTCCCGAGGTACCGACCGTTGGCCTGATGCATTCGCGCCTCATCGATCCAGCCGCCCTTGCCCGTCAGGC
CAATCTCGATGCCATGAACATCGAGATCTACCATTTCGCCAGCGGTGAAGCCCGCCAACTCCACAACGAGGGATTTGCCG
CTTTTTGCTACCTACCGACGGGGTACCATGAAAAACTCGCGCAGTACGGCGTGGACGTGGAAACGCAGCTCGTTCAGTGG
GTTCGTGAAGGTCAGTTGGATCAGTTGCTCGGAGACGACGTCGCACAGGTCGCCAGGCTCAAGGACCGTGCAAATGGCTG
A

Upstream 100 bases:

>100_bases
CGGCGTTGTTATTGTTCTCACCACCCTGTCCATCAGCCTGCTCGGCGACTACTTGCGCGATCGCTTCGACGCGCGCCTGC
GATAAACGAAAGGAATGAAA

Downstream 100 bases:

>100_bases
TCGGGACACATCGACCTCTCACGCAGGAGAAACAGCTTCGATTGTGGAAGAGATCGCGCGCAAGGCAGGCGACCTTGCCC
TCGCTCATTTCCGCTCCCTA

Product: agrocinopine phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNPLRMTPETIRLGGHRGHSAGAPENTLAAFRKAFEFGGRNVTCETDLGITRDGELVLIHDKTVDRTTDGHGIVHDMTYS
ELSKLDAGSWFSSEFVGERVPLLKDALQLARELGIIYQLELKIYDANDVFFPKLRTLIDELGCADLLQFSSFDYVQLKAV
KEAIPEVPTVGLMHSRLIDPAALARQANLDAMNIEIYHFASGEARQLHNEGFAAFCYLPTGYHEKLAQYGVDVETQLVQW
VREGQLDQLLGDDVAQVARLKDRANG

Sequences:

>Translated_266_residues
MNPLRMTPETIRLGGHRGHSAGAPENTLAAFRKAFEFGGRNVTCETDLGITRDGELVLIHDKTVDRTTDGHGIVHDMTYS
ELSKLDAGSWFSSEFVGERVPLLKDALQLARELGIIYQLELKIYDANDVFFPKLRTLIDELGCADLLQFSSFDYVQLKAV
KEAIPEVPTVGLMHSRLIDPAALARQANLDAMNIEIYHFASGEARQLHNEGFAAFCYLPTGYHEKLAQYGVDVETQLVQW
VREGQLDQLLGDDVAQVARLKDRANG
>Mature_266_residues
MNPLRMTPETIRLGGHRGHSAGAPENTLAAFRKAFEFGGRNVTCETDLGITRDGELVLIHDKTVDRTTDGHGIVHDMTYS
ELSKLDAGSWFSSEFVGERVPLLKDALQLARELGIIYQLELKIYDANDVFFPKLRTLIDELGCADLLQFSSFDYVQLKAV
KEAIPEVPTVGLMHSRLIDPAALARQANLDAMNIEIYHFASGEARQLHNEGFAAFCYLPTGYHEKLAQYGVDVETQLVQW
VREGQLDQLLGDDVAQVARLKDRANG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=130, Percent_Identity=39.2307692307692, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1789858, Length=228, Percent_Identity=31.140350877193, Blast_Score=104, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17542344, Length=111, Percent_Identity=36.9369369369369, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29618; Mature: 29618

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLRMTPETIRLGGHRGHSAGAPENTLAAFRKAFEFGGRNVTCETDLGITRDGELVLIH
CCCCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
DKTVDRTTDGHGIVHDMTYSELSKLDAGSWFSSEFVGERVPLLKDALQLARELGIIYQLE
CCCCCCCCCCCCEEECCCHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEEEE
LKIYDANDVFFPKLRTLIDELGCADLLQFSSFDYVQLKAVKEAIPEVPTVGLMHSRLIDP
EEEECCCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCH
AALARQANLDAMNIEIYHFASGEARQLHNEGFAAFCYLPTGYHEKLAQYGVDVETQLVQW
HHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHH
VREGQLDQLLGDDVAQVARLKDRANG
HHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPLRMTPETIRLGGHRGHSAGAPENTLAAFRKAFEFGGRNVTCETDLGITRDGELVLIH
CCCCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
DKTVDRTTDGHGIVHDMTYSELSKLDAGSWFSSEFVGERVPLLKDALQLARELGIIYQLE
CCCCCCCCCCCCEEECCCHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEEEE
LKIYDANDVFFPKLRTLIDELGCADLLQFSSFDYVQLKAVKEAIPEVPTVGLMHSRLIDP
EEEECCCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCH
AALARQANLDAMNIEIYHFASGEARQLHNEGFAAFCYLPTGYHEKLAQYGVDVETQLVQW
HHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHH
VREGQLDQLLGDDVAQVARLKDRANG
HHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]