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The map label for this gene is rarD [C]

Identifier: 57651087

GI number: 57651087

Start: 2791221

End: 2792129

Strand: Reverse

Name: rarD [C]

Synonym: SACOL2719

Alternate gene names: 57651087

Gene position: 2792129-2791221 (Counterclockwise)

Preceding gene: 57651091

Following gene: 57651084

Centisome position: 99.38

GC content: 34.65

Gene sequence:

>909_bases
GTGAATTCAGAGTATAAAAAAGGCATATTTTTAGCACTCAGTGCATACATTCTGTGGGGAATACTACCTATATATTGGCA
GTTCGTTGATGCAATAGGCGCATTTGAAATTTTAGCCTTTCGTATTATATTTTCAGCAATATTCATGATTTTCATACTCG
CGGTTGGACAAAAACAACGCAATGCATTTCAACGAGATATGAATCAATTGTTAGGCAAGCCCATTCAGCTATTAGCGATT
GTCGTAGCAGGCTATGTCATTACATTAAATTGGGGTACATTTATTTGGGCTGTAACGAACGGTCACGTCCTACAAACAAG
TTTAGGTTATTATATAAATCCACTTGTTAGCATTTTGCTCGCACTTATCTTTTTAAAAGAAAGATTCAATAAATTTGAAT
GGCTAGCCATTTTATTCGCATTCATCGGTGTATTATATATGACGCTCAAGATTGGAGAATTCCCAATCGTCTCTATTATA
TTAGCGTTATCCTTTGGTACATACGGATTATTGAAAAAAGTAGTACATATTGATGCCATCAGCAGTATTACGATTGAATG
TATTGTTACCGCACCTGCTGGACTAATATACGTTATTTATTTATGGCAGCAACATCAGATGTCATTTGGATTGAACATGT
CATCATTTTGGTTGTTATTTTCTGGTGCTATTACGGCAATACCACTAATCCTATTCTCAGCCGGGGCAAAACGTATTCCA
CTTTCGCTAATAGGATTTATTCAATACGTTGGACCAACAATAATGTTTGTACTCGGCATATTTGTTTTCAAAGAGCCTTT
TAGTATAGATCAATTAATTACGTTTATATTTATTTGGACAGGTATTGTGTTATATAGTCTTTCTCAATACATTAAATTGA
AGAAACATCCGGTCGCAAAAACCCTATAA

Upstream 100 bases:

>100_bases
GATATCTTTATCGAAATATTATTAGTAAAATCGTTATATTAGCATAACCAAGTGAGCGTATGCAGTAAATTAAAAATTAG
GAAAGTAAGGAGGTTTGAAG

Downstream 100 bases:

>100_bases
AATACGAGGAAAGATAATTATACGTGTTTTCAATATCCTTTGTGTCATGATGAGGTGAGACTGAGGTATGTGTGCAGTAA
CAGTGACAGACGTATAAATT

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAI
VVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

Sequences:

>Translated_302_residues
MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAI
VVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL
>Mature_302_residues
MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAI
VVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSII
LALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=288, Percent_Identity=37.1527777777778, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34121; Mature: 34121

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
HHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCEEEEEEECCEEEEHHHHHHHHHHHHHHH
ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH
SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
HHHEEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TL
CC
>Mature Secondary Structure
MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
HHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCEEEEEEECCEEEEHHHHHHHHHHHHHHH
ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH
SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
HHHEEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]