Click here to switch to the map view.

The map label for this gene is yvcD [H]

Identifier: 57650104

GI number: 57650104

Start: 853270

End: 854709

Strand: Direct

Name: yvcD [H]

Synonym: SACOL0828

Alternate gene names: 57650104

Gene position: 853270-854709 (Clockwise)

Preceding gene: 57650103

Following gene: 57650105

Centisome position: 30.37

GC content: 29.38

Gene sequence:

>1440_bases
ATGGCGCAAAAGAATAATAATGTAATTCCAATGACTTTTGATGATGCATTTTATCGTAAAATGGCTAAACAGAAGTTTAA
ACAAAGAGAATATAAACGAGCTGCTGAATACTTTGAAAAAGTGTTAGAATTGTCACCTGATGATATGGAAATTCAAATTG
ATTATGCACAATGTCTAGTGCAACTTGGTATTGCTAAAAAAGCAGAACATTTATTTTATGACAATATTATTTATAATAGG
CATCTAGAAGATAGCTTTTATGAATTGAGTCAGCTCAACATTGAAGTTAACGAACCAAACAAGGCATTCTTGTTTGGTAT
TAATTATGTTATTGTTAGCGACGACCAAGATTATAGAGATGAATTAGATCAAATGTTTGATGTGAAATATCAAAGTGAAG
AACAAATTGAACTTGAAGCTCAATTGTTTGTAGTTCAAATACTATTCCAATATCTTTTTTCTCAAGGTCGATTAAAAGAT
GCAAAGAATTATGTCTTACATCAACCACAAGAAGTTCAAGATCATCGTGTAGTACGTAATTTATTGGCAATGTGTTATTT
ATATCTCGGTGAATATGATAGGGCTAAAGCATTGTACGAAGCACTATTACAAGAGGATAGTACAGATATATATGCATTAT
GCCATTATACTTTGCTACTTTATAACACTAAGGAAAATGAACAATATCAAAAATATTTAAAAATATTAAACAAAGTTGTA
CCTATGAATGACGATGAAAGTTTTAAATTAGGTATTGTATTAAGTTATTTAAAGCAGTATCGTGCATCACAACAATTGTT
GTACCCTTTATATAAAAAAGGGAAATTTTTATCAATTCAAATGTACAATGCTTTAGCATATAATTATTATTATTTAGGTG
AAGAAGACGAAAGTCATTACTACTGGGATAAATTGAAGCAAATTTCTAAAGTGGAAATTGGACATGCGCCTTGGGTAATT
GAAAATAGCAAAGAAGTTTTTGACCAACATATTTTGCCATTACTTCAAAGTGATGACAGTCATTATCGTTTATATGGTAT
TTTTTTATTGGATCAATTAAATGGTAAAGAAATTGTGATGACGGAAAGTATTTGGCAGGTTTTGGAAAATCTAAATAATT
ATGAGAAATTGTATTTAACGTATTTAGTTCAAGGTTTAACGCTCAATAAATTAGACTTCATTCATCGCGGCTTATTAACG
CTTTACCATAATGAATTATTTGTAAGTGAAAATGATGTAATGGTTGCATGGATTAATCAAGGTGAACTCATAATTGCTGA
AAAAGTAGATTTAACTGATGTTGAGCCATATATCGGTGCGTTTATTTATTTGTATTTTAAAAATCAACCTCGAAACGTTA
CAAAGAAGCAAATTACAACATGGTTAGGCATAACACAATATAAACTGAACAAAATGATTGAATTTCTCTTGAGCATATAG

Upstream 100 bases:

>100_bases
AAAGTTGCAGCTGGTACGGTTGTTTCAAAAGATATACCGGATAATGGATTTGCATATGGCAACCCTATGTATATAAAAAT
GATTAGGAGGTGACAATTTT

Downstream 100 bases:

>100_bases
ATTTATGAAAAGTTAGATTTATTATATAATGCGCATAATGATTAATAATGAGGAGGCGTTAATAAAATGACTGAAATAGA
TTTTGATATAGCAATTATCG

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNR
HLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
AKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDRAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVI
ENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLT
LYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI

Sequences:

>Translated_479_residues
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNR
HLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
AKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDRAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVI
ENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLT
LYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>Mature_478_residues
AQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRH
LEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDA
KNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDRAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVP
MNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIE
NSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTL
YHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57135; Mature: 57004

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLV
CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
QLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEEEEEECCCCHHHH
ELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRN
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHH
LLAMCYLYLGEYDRAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCHHHHHHHHHHHHHC
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHY
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCH
YWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVM
HHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEE
TESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQ
HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEECCCEEEEEECC
GELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
CCEEEEECCCCCCCCHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLV
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
QLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEEEEEECCCCHHHH
ELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRN
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHH
LLAMCYLYLGEYDRAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCHHHHHHHHHHHHHC
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHY
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCH
YWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVM
HHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEE
TESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQ
HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEECCCEEEEEECC
GELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
CCEEEEECCCCCCCCHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]