Click here to switch to the map view.

The map label for this gene is sodC [H]

Identifier: 41410370

GI number: 41410370

Start: 4740114

End: 4740878

Strand: Reverse

Name: sodC [H]

Synonym: MAP4272c

Alternate gene names: 41410370

Gene position: 4740878-4740114 (Counterclockwise)

Preceding gene: 41410371

Following gene: 41410367

Centisome position: 98.16

GC content: 70.72

Gene sequence:

>765_bases
ATGCACAAGGGCGCAACCTTCGCGGTGGCGGCGGTCACCGCGGCCATCGCACCGCTGGCCGCCTGCGCGAACCAGCAGAG
CAGCCAACCCAACACCGCACCGCTGACCAGCTCGGTGCCCGGATCGGAGCGGTTGACCACCCAGCTCAAGACCGCCGAGG
GGATCCCGGTCGCCAACGCCAGCTTCGAATTCGCGAACGGCTACGCGACGGTGACCGTGGAAGCCGGCCCGAACCAGGTG
CTGAGCCCCGGGTTCCACGGCCTGCAGATCCACGCGGTGGGCAAGTGCGAGGCGAATTCGACTGCGCCGACGGGCGGTTC
GACCGGTGACTTCGAATCCGCCGGCGCGGTCTATCAGGCGCCGGACCACACCGGCTATCCCGCCAGCGGCGATTTGACCG
CGCTGCAGGTGCGCTCCGACGGTTCGGCGAAACTGGTCACCACCAGCAACGCGTTCACCGCCGCGGACCTGAGGACCAGC
TCGGGCAGCGCGCTGATCCTGCACCAGAACGCGAACAACCTGGCCAACACGCCCGCCGCCGATTCCGGTAAACGGCTGGC
CTGCGGGGTGATCGCGGCGTCGTCGGCCACCTCCACCACGACCACGCCGACGACCAGCGTCACGACGAGCACCACCACCG
TCGCGGTGCCGCCGCCGTCGACCAGCACGAGCACCAGCACGGTCACGGTCACCGGCACCCCGACCGCGACGTCCACCCCG
ACCACCACCGTGACCACGCCGCCCAGCCTGCCGCCCGGGCGGTGA

Upstream 100 bases:

>100_bases
TGACCTGTTGCTCAAGGGCGAGATCGGCCGCGGGCGCGGTATCCGCCGCTCGGCCTGAGACCGCCGTTTCGGCCTGCGCC
GATCCGGGTAGGCAGCGCCC

Downstream 100 bases:

>100_bases
CGCTCAAGCCCACGGGCTGCTCACCGGGTGCTGCTCGGCCTGCTGTGGCCGCACCTCCACTTGCCCGGCGCCTGGGGCGT
CACGGCGGTGGCCCTTGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MHKGATFAVAAVTAAIAPLAACANQQSSQPNTAPLTSSVPGSERLTTQLKTAEGIPVANASFEFANGYATVTVEAGPNQV
LSPGFHGLQIHAVGKCEANSTAPTGGSTGDFESAGAVYQAPDHTGYPASGDLTALQVRSDGSAKLVTTSNAFTAADLRTS
SGSALILHQNANNLANTPAADSGKRLACGVIAASSATSTTTTPTTSVTTSTTTVAVPPPSTSTSTSTVTVTGTPTATSTP
TTTVTTPPSLPPGR

Sequences:

>Translated_254_residues
MHKGATFAVAAVTAAIAPLAACANQQSSQPNTAPLTSSVPGSERLTTQLKTAEGIPVANASFEFANGYATVTVEAGPNQV
LSPGFHGLQIHAVGKCEANSTAPTGGSTGDFESAGAVYQAPDHTGYPASGDLTALQVRSDGSAKLVTTSNAFTAADLRTS
SGSALILHQNANNLANTPAADSGKRLACGVIAASSATSTTTTPTTSVTTSTTTVAVPPPSTSTSTSTVTVTGTPTATSTP
TTTVTTPPSLPPGR
>Mature_254_residues
MHKGATFAVAAVTAAIAPLAACANQQSSQPNTAPLTSSVPGSERLTTQLKTAEGIPVANASFEFANGYATVTVEAGPNQV
LSPGFHGLQIHAVGKCEANSTAPTGGSTGDFESAGAVYQAPDHTGYPASGDLTALQVRSDGSAKLVTTSNAFTAADLRTS
SGSALILHQNANNLANTPAADSGKRLACGVIAASSATSTTTTPTTSVTTSTTTVAVPPPSTSTSTSTVTVTGTPTATSTP
TTTVTTPPSLPPGR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25060; Mature: 25060

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKGATFAVAAVTAAIAPLAACANQQSSQPNTAPLTSSVPGSERLTTQLKTAEGIPVANA
CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEEHHCCCCEECCC
SFEFANGYATVTVEAGPNQVLSPGFHGLQIHAVGKCEANSTAPTGGSTGDFESAGAVYQA
CEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEC
PDHTGYPASGDLTALQVRSDGSAKLVTTSNAFTAADLRTSSGSALILHQNANNLANTPAA
CCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCC
DSGKRLACGVIAASSATSTTTTPTTSVTTSTTTVAVPPPSTSTSTSTVTVTGTPTATSTP
CCCCEEEEEEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCC
TTTVTTPPSLPPGR
CEEEECCCCCCCCC
>Mature Secondary Structure
MHKGATFAVAAVTAAIAPLAACANQQSSQPNTAPLTSSVPGSERLTTQLKTAEGIPVANA
CCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEEHHCCCCEECCC
SFEFANGYATVTVEAGPNQVLSPGFHGLQIHAVGKCEANSTAPTGGSTGDFESAGAVYQA
CEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEC
PDHTGYPASGDLTALQVRSDGSAKLVTTSNAFTAADLRTSSGSALILHQNANNLANTPAA
CCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCC
DSGKRLACGVIAASSATSTTTTPTTSVTTSTTTVAVPPPSTSTSTSTVTVTGTPTATSTP
CCCCEEEEEEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCC
TTTVTTPPSLPPGR
CEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11549243 [H]