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The map label for this gene is 41410315

Identifier: 41410315

GI number: 41410315

Start: 4688035

End: 4688574

Strand: Direct

Name: 41410315

Synonym: MAP4217

Alternate gene names: NA

Gene position: 4688035-4688574 (Clockwise)

Preceding gene: 41410314

Following gene: 41410316

Centisome position: 97.07

GC content: 72.22

Gene sequence:

>540_bases
GTGGCGGCACACAACGAACCCGTCGGCCCGCGACCGCTGCGCGCGGTGCCCGAGGGCGGCTACCCGGACTGGGAAGCCGT
CTACGCCGACAACGCGGCCTGGGTGTATCGCACGCTGTTCGCCCGGGTCGGCAACCGGGCCGACGCCGAGGACCTCACCG
CCGAGGTCTTCCTGGCCGCGTTGCGGCCGCTGCGGCTGACCGCCAGCGCCGCCGAGGTGCGCGCCTACCTGCGCGCCACC
GCCCGCACGGTGCTGGCCGCGCACTGGCGCGAGACGCTGGGGCGGGAGATAACCTCGATCGAGGACATCGAACAACCGCC
CGAGCACCCCGACGCGATCAGCACCGCCCCGCAGCGCGTCGCCCGGGTGCTGGACAGCCTGCCGGACCGCTATCGCCGCA
TCCTGGAATCGCGCTTCCTGCAAGGTAATTCGATCAAGGAGGCAGCCGCGGAACTGGGAATCAGCGTGGCCAACGCCAAG
GTGCTGCAGCACCGCGCGCTGCGGCTGGCGGCACAGGTCAACGAGGGAGGCCGGCCATGA

Upstream 100 bases:

>100_bases
CCGCCGCCAGGCTGGGCGAGCTGCTAGCTGCCGACGCCGCACTCGCCGCGAGCTGACCCGTGTAACCCGAGCCGATACTT
CATAGCGGTGAAGGAGGCAG

Downstream 100 bases:

>100_bases
ACGCGCGAGGGCTGCGGCGCTACGTCGACGACCTGTTGCGGGGCCGCCGGCCCCGGCCGTTCCTGCCCGACGATTTCGAG
GCGGCCCAGCTGCGCACCGC

Product: hypothetical protein

Products: NA

Alternate protein names: RNA Polymerase ECF-Subfamily Sigma Factor; ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Sub Family Sigma-70 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MAAHNEPVGPRPLRAVPEGGYPDWEAVYADNAAWVYRTLFARVGNRADAEDLTAEVFLAALRPLRLTASAAEVRAYLRAT
ARTVLAAHWRETLGREITSIEDIEQPPEHPDAISTAPQRVARVLDSLPDRYRRILESRFLQGNSIKEAAAELGISVANAK
VLQHRALRLAAQVNEGGRP

Sequences:

>Translated_179_residues
MAAHNEPVGPRPLRAVPEGGYPDWEAVYADNAAWVYRTLFARVGNRADAEDLTAEVFLAALRPLRLTASAAEVRAYLRAT
ARTVLAAHWRETLGREITSIEDIEQPPEHPDAISTAPQRVARVLDSLPDRYRRILESRFLQGNSIKEAAAELGISVANAK
VLQHRALRLAAQVNEGGRP
>Mature_178_residues
AAHNEPVGPRPLRAVPEGGYPDWEAVYADNAAWVYRTLFARVGNRADAEDLTAEVFLAALRPLRLTASAAEVRAYLRATA
RTVLAAHWRETLGREITSIEDIEQPPEHPDAISTAPQRVARVLDSLPDRYRRILESRFLQGNSIKEAAAELGISVANAKV
LQHRALRLAAQVNEGGRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19722; Mature: 19591

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAHNEPVGPRPLRAVPEGGYPDWEAVYADNAAWVYRTLFARVGNRADAEDLTAEVFLAA
CCCCCCCCCCCCCCCCCCCCCCCCHHEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LRPLRLTASAAEVRAYLRATARTVLAAHWRETLGREITSIEDIEQPPEHPDAISTAPQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ARVLDSLPDRYRRILESRFLQGNSIKEAAAELGISVANAKVLQHRALRLAAQVNEGGRP
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AAHNEPVGPRPLRAVPEGGYPDWEAVYADNAAWVYRTLFARVGNRADAEDLTAEVFLAA
CCCCCCCCCCCCCCCCCCCCCCCHHEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LRPLRLTASAAEVRAYLRATARTVLAAHWRETLGREITSIEDIEQPPEHPDAISTAPQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ARVLDSLPDRYRRILESRFLQGNSIKEAAAELGISVANAKVLQHRALRLAAQVNEGGRP
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA