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The map label for this gene is sigL

Identifier: 41410299

GI number: 41410299

Start: 4670740

End: 4671285

Strand: Direct

Name: sigL

Synonym: MAP4201

Alternate gene names: 41410299

Gene position: 4670740-4671285 (Clockwise)

Preceding gene: 41410298

Following gene: 41410300

Centisome position: 96.71

GC content: 68.5

Gene sequence:

>546_bases
GTGGCTCGTGTGGTCGGCATTTCCAGGGCGTCCGGGACTGCCGAGGCCGCTCTGATGAAGGCGCTCTACGACGAACACGC
CGCGGTGCTGTGGCGCTACGCGCTGCGGCTGACCGGCGACGCGAGCCAATCCGAGGATGTGGTGCAGGAGACGTTGCTGC
GGGCCTGGCAGCATCCCGAGGTCATCGGCGACACCGAGCGCTCGGCCCGGGCGTGGTTGTTCACGGTGGCCCGCAACATG
ATCATCGACGACCGGCGCAGCGCGCGGTTCCGCAACGTGGTCGGCTCGACCGACACCGCGGGGGCGCCCGAACAGTCCAC
GCCCGACGAGGTCAACGCGGCGCTGGACCGGTTGCTGATCGCCGACGCGATGGCCCAGCTGTCGGCCGAGCACCGCGCCG
TGATCGAACGGTCCTACTACCGCGGTTGGACCACCGCGCAGATAGCTACAGACCTCGGCATCGCCGAGGGAACGGTGAAG
TCGCGACTACACTATGCGGTGCGGGCGTTGCGACTCACTCTGCAGGAACTCGGGGTCACCCGATGA

Upstream 100 bases:

>100_bases
CGCCGGGCCGCGCATCCTGACGATCGGGTAGGGGCGCACCGGGTCGGGGCCGTTGAACCGAACCTTCGCCGGGCTCGTTT
CCCCGGCAGGAGGTGATCGA

Downstream 100 bases:

>100_bases
GGGACTTTCCGAATGTTTGAGGGGTGAGCAGACATGGATGAAATGAGGACGCCGGTGCACGACGTCGGCCCTCCCGAAGA
CCGCTACGCGATGTGGGATG

Product: RNA polymerase sigma factor SigL

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigL; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; ECF Sigma Factor; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor SigK; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase; RNA Polymerase Sigma Subunit Protein; Sigma-; RNA Polymerase Sigma-E Factor; RNA Polymerase ECF-Type Sigma Factor Family Protein; ECF RNA Polymerase Sigma-70 Family; DNA-Directed RNA Polymerase Sigma Subunit; Sigma Factor Sigma; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; AlteRNAtive RNA Polymerase Sigma Factor SigL; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-H Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MARVVGISRASGTAEAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGDTERSARAWLFTVARNM
IIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVK
SRLHYAVRALRLTLQELGVTR

Sequences:

>Translated_181_residues
MARVVGISRASGTAEAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGDTERSARAWLFTVARNM
IIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVK
SRLHYAVRALRLTLQELGVTR
>Mature_180_residues
ARVVGISRASGTAEAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGDTERSARAWLFTVARNMI
IDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKS
RLHYAVRALRLTLQELGVTR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20008; Mature: 19877

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVVGISRASGTAEAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPE
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
VIGDTERSARAWLFTVARNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLI
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
ADAMAQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
R
C
>Mature Secondary Structure 
ARVVGISRASGTAEAALMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPE
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
VIGDTERSARAWLFTVARNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLI
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
ADAMAQLSAEHRAVIERSYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA