| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409937
Identifier: 41409937
GI number: 41409937
Start: 4294702
End: 4295307
Strand: Reverse
Name: 41409937
Synonym: MAP3839c
Alternate gene names: NA
Gene position: 4295307-4294702 (Counterclockwise)
Preceding gene: 41409948
Following gene: 41409936
Centisome position: 88.93
GC content: 66.01
Gene sequence:
>606_bases TTGCCGATGTCTACCGATGAACTCGACCAACTCTTGCTCGATCGGTTCAACTTGCGCCGCTCCGACCTGATCGCGGCGCT TAAAACGCTCTCCGCGCACCGGCCGTGGGCGGCCACGCTGACCACCGACGAGGCCCGGCTGCTCGATGACGCCGGTTTCA CCGAAGATCCCGGAGCCTACGCGGAGATCGCAGCCGACGTCACCGCCCATATGGCCAGGCTGTACGGCACGGCCTACAGC GCCGCCGACGTCAGCAAAGGACTCGGCGTCAACGACTCCCGCGTGAGGCAACGCCGCCTCGCCCACACGCTATGGGCTAT CGACGACGGCGGCACCTGGGTGTACCCCGCGATCCAGTTCGAGATCGTCGACCGCGGCCGCGACGAGCCCCTCACGCTCA AACAGGTCCGCGGCCTGGACGCGGTGCTGCCGGCTCTGCTCGCTAGGGACCTGCATCCCACCGCGGTGGCCGGCTTTCTC ATGACGGCGCAACCCGATTTACGAATCGACGGTCAGCCGAAGTCGGTGCGGGACTGGCTGTTACACGGTGAATCCGTCGG GCCGGTACTCGAACTGATCGAGATCGCCGATTGGACCGCGACTTGA
Upstream 100 bases:
>100_bases CGGCGCGCGCCCGCATCTTGTTCCCGGGGGCTATCGTTCGAGCCAGAATCCATCTAACGGTGATAGAATTCTGTTAATTT CCGTTAGCGCGCGCGAAGGC
Downstream 100 bases:
>100_bases CCGTCGACCCCATGCTGCCGGAACCTCCGGCACCGCACATATTGCGCTCGCTCGGCATCGGCGACGACGAGATGCGCGCG ATCGGCGTCGATGAGATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MPMSTDELDQLLLDRFNLRRSDLIAALKTLSAHRPWAATLTTDEARLLDDAGFTEDPGAYAEIAADVTAHMARLYGTAYS AADVSKGLGVNDSRVRQRRLAHTLWAIDDGGTWVYPAIQFEIVDRGRDEPLTLKQVRGLDAVLPALLARDLHPTAVAGFL MTAQPDLRIDGQPKSVRDWLLHGESVGPVLELIEIADWTAT
Sequences:
>Translated_201_residues MPMSTDELDQLLLDRFNLRRSDLIAALKTLSAHRPWAATLTTDEARLLDDAGFTEDPGAYAEIAADVTAHMARLYGTAYS AADVSKGLGVNDSRVRQRRLAHTLWAIDDGGTWVYPAIQFEIVDRGRDEPLTLKQVRGLDAVLPALLARDLHPTAVAGFL MTAQPDLRIDGQPKSVRDWLLHGESVGPVLELIEIADWTAT >Mature_200_residues PMSTDELDQLLLDRFNLRRSDLIAALKTLSAHRPWAATLTTDEARLLDDAGFTEDPGAYAEIAADVTAHMARLYGTAYSA ADVSKGLGVNDSRVRQRRLAHTLWAIDDGGTWVYPAIQFEIVDRGRDEPLTLKQVRGLDAVLPALLARDLHPTAVAGFLM TAQPDLRIDGQPKSVRDWLLHGESVGPVLELIEIADWTAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22097; Mature: 21966
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMSTDELDQLLLDRFNLRRSDLIAALKTLSAHRPWAATLTTDEARLLDDAGFTEDPGAY CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCCCCHH AEIAADVTAHMARLYGTAYSAADVSKGLGVNDSRVRQRRLAHTLWAIDDGGTWVYPAIQF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCEEEEEEEEE EIVDRGRDEPLTLKQVRGLDAVLPALLARDLHPTAVAGFLMTAQPDLRIDGQPKSVRDWL EEECCCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCCCHHHHHHH LHGESVGPVLELIEIADWTAT HCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure PMSTDELDQLLLDRFNLRRSDLIAALKTLSAHRPWAATLTTDEARLLDDAGFTEDPGAY CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCCCCHH AEIAADVTAHMARLYGTAYSAADVSKGLGVNDSRVRQRRLAHTLWAIDDGGTWVYPAIQF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCEEEEEEEEE EIVDRGRDEPLTLKQVRGLDAVLPALLARDLHPTAVAGFLMTAQPDLRIDGQPKSVRDWL EEECCCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCCCHHHHHHH LHGESVGPVLELIEIADWTAT HCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA