Click here to switch to the map view.

The map label for this gene is dcd

Identifier: 41409918

GI number: 41409918

Start: 4268775

End: 4269347

Strand: Direct

Name: dcd

Synonym: MAP3820

Alternate gene names: 41409918

Gene position: 4268775-4269347 (Clockwise)

Preceding gene: 41409917

Following gene: 41409919

Centisome position: 88.38

GC content: 64.57

Gene sequence:

>573_bases
GTGCTGCTCTCCGATCGCGACCTCAGGGCCGAAATCACCGCCGGGCGGTTGGGCATCGAGCCGTTCGATGACGCGCTGGT
GCAGCCGTCCAGCGTCGACGTCCGCCTTGACTGCATGTTCCGGGTTTTCAACAACACTCGCTACACCCACATCGACCCGG
CCAAGCAGCAGGACGAGCTCACCTCGCTGGTCGAACCGCAAGACGGTGAGCCGTTCGTGCTGCACCCCGGCGAGTTCGTG
CTCGGCTCGACGCTCGAGCTCATCACCCTGCCCGACGACCTCGCCGGACGTTTGGAGGGCAAATCGTCCCTGGGCCGCCT
GGGGCTGCTGACGCACTCGACCGCCGGCTTCATCGATCCCGGCTTCAGCGGCCACATCACGCTCGAGCTGTCCAACGTCG
CCAACCTGCCGATCACGCTGTGGCCGGGCATGAAGATCGGTCAGCTGTGCATTCTGCGGTTGACCAGTCCGGCCGAACAC
CCGTACGGCAGCACTCGCGTAGGTTCGAAGTACCAGGGCCAGCGAGGACCGACACCGTCGCGCTCGTACCAGAACTTCAT
AACGTCTACATAG

Upstream 100 bases:

>100_bases
ACTACGACCACGTCCACGTCACGACCATCGGCGGCGGATACCCCACCGGCGACGAGGTCTATCTCCGCTGAACGCGCTGC
GCAGCAGTTAGGCTCGCTTG

Downstream 100 bases:

>100_bases
GTTCTGCGGGGCTCTCACGCCACCGTTCTGCGCGATACTTAGTTAGCCGTGGTTTTTTCCTCCGCCTGGCCGTGGCGATT
GCGCAACACCTTTGGAGGGG

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLLSDRDLRAEITAGRLGIEPFDDALVQPSSVDVRLDCMFRVFNNTRYTHIDPAKQQDELTSLVEPQDGEPFVLHPGEFV
LGSTLELITLPDDLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCILRLTSPAEH
PYGSTRVGSKYQGQRGPTPSRSYQNFITST

Sequences:

>Translated_190_residues
MLLSDRDLRAEITAGRLGIEPFDDALVQPSSVDVRLDCMFRVFNNTRYTHIDPAKQQDELTSLVEPQDGEPFVLHPGEFV
LGSTLELITLPDDLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCILRLTSPAEH
PYGSTRVGSKYQGQRGPTPSRSYQNFITST
>Mature_190_residues
MLLSDRDLRAEITAGRLGIEPFDDALVQPSSVDVRLDCMFRVFNNTRYTHIDPAKQQDELTSLVEPQDGEPFVLHPGEFV
LGSTLELITLPDDLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCILRLTSPAEH
PYGSTRVGSKYQGQRGPTPSRSYQNFITST

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788379, Length=190, Percent_Identity=44.2105263157895, Blast_Score=140, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962
- InterPro:   IPR008180 [H]

Pfam domain/function: PF00692 dUTPase [H]

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 20806; Mature: 20806

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSDRDLRAEITAGRLGIEPFDDALVQPSSVDVRLDCMFRVFNNTRYTHIDPAKQQDEL
CCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCEEEECCCCHHHHH
TSLVEPQDGEPFVLHPGEFVLGSTLELITLPDDLAGRLEGKSSLGRLGLLTHSTAGFIDP
HHHCCCCCCCEEEECCCCEEECCEEEEEECCHHHHHHCCCCCCCCEEEEEEECCCCCCCC
GFSGHITLELSNVANLPITLWPGMKIGQLCILRLTSPAEHPYGSTRVGSKYQGQRGPTPS
CCCCEEEEEECCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
RSYQNFITST
HHHHHHHCCC
>Mature Secondary Structure
MLLSDRDLRAEITAGRLGIEPFDDALVQPSSVDVRLDCMFRVFNNTRYTHIDPAKQQDEL
CCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCEEEECCCCHHHHH
TSLVEPQDGEPFVLHPGEFVLGSTLELITLPDDLAGRLEGKSSLGRLGLLTHSTAGFIDP
HHHCCCCCCCEEEECCCCEEECCEEEEEECCHHHHHHCCCCCCCCEEEEEEECCCCCCCC
GFSGHITLELSNVANLPITLWPGMKIGQLCILRLTSPAEHPYGSTRVGSKYQGQRGPTPS
CCCCEEEEEECCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
RSYQNFITST
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA