Click here to switch to the map view.

The map label for this gene is eccD3 [H]

Identifier: 41409884

GI number: 41409884

Start: 4232337

End: 4233779

Strand: Direct

Name: eccD3 [H]

Synonym: MAP3786

Alternate gene names: 41409884

Gene position: 4232337-4233779 (Clockwise)

Preceding gene: 41409883

Following gene: 41409885

Centisome position: 87.63

GC content: 74.15

Gene sequence:

>1443_bases
GTGACGTCCGGAACCGTCATGCCGATCGTCCGGGTGGCAATACTGGCGGACAGCAGGCTGACGGAGATGGCCCTGCCCGC
CGAGCTGCCGCTACGCGAGATCCTGCCCGCCGTACAGCGTTTGGTGGTTCCGGCCGCCGCCAACGGCGACTCGGAGGACG
GCGCCCCGTCGCGGGGCGCCGCAGAGGTCGGCGGGGCGGTGCAACTGAGCCTGGCGCCCATCGGCGGGGCGCCGTTCAGC
CTGGACGCCAGCCTGGACACGGTCGGCGTCGTCGACGGTGACCTGCTGGCCCTGCAACCGGTGCCGGCCGGCCCGGCCGC
GCCCGGCATCGTGGAGGACATCGCCGACGCGGCCATGATCTTCTCCACCTCGCGGCTACGGCCTTGGGGCACAACGCATA
TCCAGCGTTTCGCGCTGGCCGCGGTGATCGCGGTGGCCCTACTGGCGACCGGACTGTCGGTCAGCTACCGGGTCGCCACC
GGAGCGCTGGCCGGGCTGGTCGCGGTCAGCGCGGTGGCGGCACTGACCGCGATAGTCGGCCTGCTGGCCACCGCCCGCTC
GCCGCGCACCGGGATGGCGCTCTCGATCGCGGCGCTGGTGCCCATCGGCGCGGCGCTGGCGCTGGCGGTGCCGGGCCGGT
TCGGTCCCGCGCAGGTGATGCTGGCCGCGGCGGGTGTCACCGCCTGGTCGCTGATCGCCCTGATGGCGCCCAGCGCCGAG
CGGGAACGCCTCGCCGGCTTCTTCACCGCGACGGCGGTGCTGGGCGCCGCGGTGCTGCTGGCCGCGGGCGCCGAATTGCT
TTGGCACATCACGCCCGTCGCGCTCGGCTGCGGCCTGATCGTGGCCGCGCTTCTGGTCACCGTGGAAGCCGCGCCGCTGT
CCGCGCTGTGGGCCCGCTTCCCGCTGCCGGTCATTCCGGCGCCGGGCGACCCCACGCCGTCGGCGCCCCCGTTGCCGGTG
CTCGAGGACCTGCCGCGGCGGGTGCGGATCGGCGACGCCCACCAGAGCGGGTTCATCGCCGCCGCGGTGCTGCTCAGCGT
GCTGGGCTCGGTGGCGATCGCGCTGCGGCCCGAAACGCTCAGTGCCGCAGGCTGGTACGTGGTGGGGGCGACGGCGGCGA
CGTCGGTGCTGCGCGCCCGGGTGTGGGACTCGGCCGCGTGCAAGGCGTGGCTGCTCGCCCAGCCGTACCTGGCCGCCGGT
GTGCTGCTGGTGCTCTACACCGCGACCGGCCGGTATGCGGGCGCCCTCGGCGCGGTGCTGGTGCTGCTGGCGCTGGTGGC
GGTGTGGATCGTGGTGGCCCTGAACCCGGGTATCGCCGCGCCGGAAAGCTATTCGCTGCCGGTGCGCCGGTTGGTCGGCT
TCGTCGCGACCGGGCTCGATGCGTCGCTGATCCCGGTCATGGCGTTCGTGGTCGGCCTGTTCGGCTGGGTGCTCGATCGA
TGA

Upstream 100 bases:

>100_bases
GGCCATCGGCTGGCCCGAGATTTTTCTGTCCAACACTGAAGAGAAATAGAGAAGAGAGCACGATGTTCCAGGAACGGCCG
CAACATTCTGCGAGGGTCCG

Downstream 100 bases:

>100_bases
TTCGGCCGGCATCGGCCTGCCTCGCGGCGGCGTTGGCGTTGTTGCCCGCCACCGCGACGTGGGCGAGTCCGCCGGCCCTC
GCGATCAGCCCGCCGACGGT

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D3; Type VII secretion system protein eccD3; T7SS protein eccD3 [H]

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MTSGTVMPIVRVAILADSRLTEMALPAELPLREILPAVQRLVVPAAANGDSEDGAPSRGAAEVGGAVQLSLAPIGGAPFS
LDASLDTVGVVDGDLLALQPVPAGPAAPGIVEDIADAAMIFSTSRLRPWGTTHIQRFALAAVIAVALLATGLSVSYRVAT
GALAGLVAVSAVAALTAIVGLLATARSPRTGMALSIAALVPIGAALALAVPGRFGPAQVMLAAAGVTAWSLIALMAPSAE
RERLAGFFTATAVLGAAVLLAAGAELLWHITPVALGCGLIVAALLVTVEAAPLSALWARFPLPVIPAPGDPTPSAPPLPV
LEDLPRRVRIGDAHQSGFIAAAVLLSVLGSVAIALRPETLSAAGWYVVGATAATSVLRARVWDSAACKAWLLAQPYLAAG
VLLVLYTATGRYAGALGAVLVLLALVAVWIVVALNPGIAAPESYSLPVRRLVGFVATGLDASLIPVMAFVVGLFGWVLDR

Sequences:

>Translated_480_residues
MTSGTVMPIVRVAILADSRLTEMALPAELPLREILPAVQRLVVPAAANGDSEDGAPSRGAAEVGGAVQLSLAPIGGAPFS
LDASLDTVGVVDGDLLALQPVPAGPAAPGIVEDIADAAMIFSTSRLRPWGTTHIQRFALAAVIAVALLATGLSVSYRVAT
GALAGLVAVSAVAALTAIVGLLATARSPRTGMALSIAALVPIGAALALAVPGRFGPAQVMLAAAGVTAWSLIALMAPSAE
RERLAGFFTATAVLGAAVLLAAGAELLWHITPVALGCGLIVAALLVTVEAAPLSALWARFPLPVIPAPGDPTPSAPPLPV
LEDLPRRVRIGDAHQSGFIAAAVLLSVLGSVAIALRPETLSAAGWYVVGATAATSVLRARVWDSAACKAWLLAQPYLAAG
VLLVLYTATGRYAGALGAVLVLLALVAVWIVVALNPGIAAPESYSLPVRRLVGFVATGLDASLIPVMAFVVGLFGWVLDR
>Mature_479_residues
TSGTVMPIVRVAILADSRLTEMALPAELPLREILPAVQRLVVPAAANGDSEDGAPSRGAAEVGGAVQLSLAPIGGAPFSL
DASLDTVGVVDGDLLALQPVPAGPAAPGIVEDIADAAMIFSTSRLRPWGTTHIQRFALAAVIAVALLATGLSVSYRVATG
ALAGLVAVSAVAALTAIVGLLATARSPRTGMALSIAALVPIGAALALAVPGRFGPAQVMLAAAGVTAWSLIALMAPSAER
ERLAGFFTATAVLGAAVLLAAGAELLWHITPVALGCGLIVAALLVTVEAAPLSALWARFPLPVIPAPGDPTPSAPPLPVL
EDLPRRVRIGDAHQSGFIAAAVLLSVLGSVAIALRPETLSAAGWYVVGATAATSVLRARVWDSAACKAWLLAQPYLAAGV
LLVLYTATGRYAGALGAVLVLLALVAVWIVVALNPGIAAPESYSLPVRRLVGFVATGLDASLIPVMAFVVGLFGWVLDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 48376; Mature: 48244

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGTVMPIVRVAILADSRLTEMALPAELPLREILPAVQRLVVPAAANGDSEDGAPSRGA
CCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
AEVGGAVQLSLAPIGGAPFSLDASLDTVGVVDGDLLALQPVPAGPAAPGIVEDIADAAMI
HHCCCEEEEEEEECCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH
FSTSRLRPWGTTHIQRFALAAVIAVALLATGLSVSYRVATGALAGLVAVSAVAALTAIVG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LLATARSPRTGMALSIAALVPIGAALALAVPGRFGPAQVMLAAAGVTAWSLIALMAPSAE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
RERLAGFFTATAVLGAAVLLAAGAELLWHITPVALGCGLIVAALLVTVEAAPLSALWARF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PLPVIPAPGDPTPSAPPLPVLEDLPRRVRIGDAHQSGFIAAAVLLSVLGSVAIALRPETL
CCCEECCCCCCCCCCCCCCHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCC
SAAGWYVVGATAATSVLRARVWDSAACKAWLLAQPYLAAGVLLVLYTATGRYAGALGAVL
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH
VLLALVAVWIVVALNPGIAAPESYSLPVRRLVGFVATGLDASLIPVMAFVVGLFGWVLDR
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSGTVMPIVRVAILADSRLTEMALPAELPLREILPAVQRLVVPAAANGDSEDGAPSRGA
CCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
AEVGGAVQLSLAPIGGAPFSLDASLDTVGVVDGDLLALQPVPAGPAAPGIVEDIADAAMI
HHCCCEEEEEEEECCCCCEEECCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH
FSTSRLRPWGTTHIQRFALAAVIAVALLATGLSVSYRVATGALAGLVAVSAVAALTAIVG
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LLATARSPRTGMALSIAALVPIGAALALAVPGRFGPAQVMLAAAGVTAWSLIALMAPSAE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
RERLAGFFTATAVLGAAVLLAAGAELLWHITPVALGCGLIVAALLVTVEAAPLSALWARF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PLPVIPAPGDPTPSAPPLPVLEDLPRRVRIGDAHQSGFIAAAVLLSVLGSVAIALRPETL
CCCEECCCCCCCCCCCCCCHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCC
SAAGWYVVGATAATSVLRARVWDSAACKAWLLAQPYLAAGVLLVLYTATGRYAGALGAVL
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH
VLLALVAVWIVVALNPGIAAPESYSLPVRRLVGFVATGLDASLIPVMAFVVGLFGWVLDR
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]