Click here to switch to the map view.

The map label for this gene is mmpS1

Identifier: 41409848

GI number: 41409848

Start: 4185977

End: 4186441

Strand: Direct

Name: mmpS1

Synonym: MAP3750

Alternate gene names: NA

Gene position: 4185977-4186441 (Clockwise)

Preceding gene: 41409847

Following gene: 41409849

Centisome position: 86.67

GC content: 59.78

Gene sequence:

>465_bases
TTGTCCGAAGGTGATCGGGTGGCACGTATTCCAGTCGCCAAGATGGTGAAGAAGCTTTGGATCGTGCTGGTCATCGTAGC
CGTGATCGCGGTGGCGGGACTCTGTGTCTCGCGCCTACGTGCCGCCTTCGCCAACCGCGACGACCGGCCGATCAGCAGCG
GTGCCGCTGACGACATCAAGCCGTTCAATCCCAAGCGGGTGGTCTACGAGGTCTACGGCCCGCCGAAGACGGTGGCCGAC
ATCAATTATCTGGACATCAATGCCCAGCCTCAGAAAGTCGCCAATGTGGCGCTGCCGTGGACGCTTTCGGTGATCACGAC
GCTTCCCTCGATGAGCGTCAACGTTGTCGCGCAGGCAGACACCGATCAGATCGGCTGCCGGATCATCGTGAACGAAGTGG
TGAAAGACGAAAGGTCGGCTGACGGCGTGCGCGCTCAAACCTTTTGCATAGTGAAGTCGGCATGA

Upstream 100 bases:

>100_bases
GCTCGGCATGTAAGGGTTATGTCCTGGTTCGGCATGAGTGGAACACGACCGGCGTGGGCAATGCGGGCCTACCACGGCGA
TCTCGAGACTCGTCGATCCG

Downstream 100 bases:

>100_bases
GCATCGACCACTTCGGGCAGCCCCCCAAACCCCAGACGTTCGCCCGCGCGGTCCGTAGGTTTGCGGTGCCCGTCGTTGTG
TTCTGGATAGGACTCGTCGT

Product: MmpS1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSEGDRVARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPPKTVAD
INYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQADTDQIGCRIIVNEVVKDERSADGVRAQTFCIVKSA

Sequences:

>Translated_154_residues
MSEGDRVARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPPKTVAD
INYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQADTDQIGCRIIVNEVVKDERSADGVRAQTFCIVKSA
>Mature_153_residues
SEGDRVARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIKPFNPKRVVYEVYGPPKTVADI
NYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQADTDQIGCRIIVNEVVKDERSADGVRAQTFCIVKSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mmpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008693 [H]

Pfam domain/function: PF05423 Mycobact_memb [H]

EC number: NA

Molecular weight: Translated: 16675; Mature: 16543

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGDRVARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIK
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PFNPKRVVYEVYGPPKTVADINYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQAD
CCCCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHCCCCHHHHHHHHCCCCCEEEEEECC
TDQIGCRIIVNEVVKDERSADGVRAQTFCIVKSA
CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SEGDRVARIPVAKMVKKLWIVLVIVAVIAVAGLCVSRLRAAFANRDDRPISSGAADDIK
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PFNPKRVVYEVYGPPKTVADINYLDINAQPQKVANVALPWTLSVITTLPSMSVNVVAQAD
CCCCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHCCCCHHHHHHHHCCCCCEEEEEECC
TDQIGCRIIVNEVVKDERSADGVRAQTFCIVKSA
CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]