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The map label for this gene is ydeA [C]

Identifier: 41409731

GI number: 41409731

Start: 4029061

End: 4030305

Strand: Direct

Name: ydeA [C]

Synonym: MAP3633

Alternate gene names: 41409731

Gene position: 4029061-4030305 (Clockwise)

Preceding gene: 41409730

Following gene: 41409732

Centisome position: 83.42

GC content: 71.65

Gene sequence:

>1245_bases
ATGACTGTGATGACTGCCGAAACCGCCAACGCAGCCGCGCGGACGTGGACCCCACGGATCGCGGCTCAGCTCGCCATTCT
CGCCGCCGCGGCCTTCACCTATGTCACCGCCGAGATCCTGCCGGTCGGCGCGCTGCCCGCAATCGCCCGCAATCTGCAGG
TCAGCCTGGTCCTGGTGGGCACCCTGCTGTCCTGGTATGCGCTGGTGGCGGCCCTGACCACGATCCCGCTGGTGCGCTGG
ACCGCGCACCTGCCGCGCCGCCGGGTGCTGGTGGCGAGCCTGACCTGCCTGACCGCCTCCCAGCTGATCTCGGCGCTGGC
GCCCAACTTCGCGGTGCTGGCCGCCGGGCGGGTGCTGTGCGCGATCACCCACGGCCTGTTGTGGTCGGTGATCGCGCCGA
TCGCCACCCGGCTGGTGCCGCCCAGCCACGCCGGGCGCGCCACCATGTCGATCTACGTCGGCACCAGCCTGGCGCTGGTG
GTGGGCAGCCCGCTGACCGCGGCGCTGAGCCTGATGTGGGGCTGGCGGCTGGCCGTCGTGTGCGTCACCGTCGCGGCCGC
CGTCGTCACCGTCGCGGCCCGGCTGATGCTGCCGGAGATGGTGCTCACCGAGCATCAGCTGGCGCATGTCGGGCCCCGCT
CGCGGCACCACCGCAACGGCCGGCTGATCACCGTGAGCCTGCTGGCCATGGTGGCGGTGACCGGCCATTTCGTGTCCTAC
ACCTTCATCGTCGAGATCATCCGCAACGTGGTCGGGGTGCGCGGGCCGACCCTGGCCTGGGTGCTGGCCGCCTACGGGCT
GGCCGGGCTGCTGTCGGTGCCGCTGGTCGCGCGGCCGCTGGACCACCGGCCCAAGAGTGCGGTGATCCTGTGCATGACGG
GTTTGACGGCCGCCTTCGCGGTGCTGACCGCGCTGGCGTTCGGCGGCCCGACCGGGGCGACGACCGCGCTGATCGGGACT
GCCGCCATCGTGCTGTGGGGAGCGATGGCCACCGCGGTGTCGCCGATGATGCAGTCGGCCGCGATGCGCAACGGGGCCGA
CGACCCGGACGGCGCCTCGGGGCTGTACGTGACGGCCTTCCAGGTGGGCATCATGGCCGGGTCGCTGCTGGGCGGGCTGC
TCTATGAGCGCAGCGTCATCCTGATGCTGAGCGCTTCCGGGGTGCTGATGGCGGTGGCGCTGGTCGGCATCGCCGCCAAC
CGGCGGATGCTGGACGTTGCCCCGACAAGCTCACGCGATTCATAA

Upstream 100 bases:

>100_bases
TTGCCCGGCCAAGATGGATGAACCGGCGACCGGTATGCGTACGGTAGGGGAGCGCGATCTGGTTTGCGGCATTGCTTAGC
CGACTGCGCACACCCAAGCG

Downstream 100 bases:

>100_bases
CCGCCCTGCTCGACGCGGTAATCACGGCCCTTTCCGGGGCGGGCGCGGCCGTCGGCGACGGTAGCTGGCAAGCCTGCTAT
GCGACACTGTGGTCGAGAAC

Product: hypothetical protein

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTVMTAETANAAARTWTPRIAAQLAILAAAAFTYVTAEILPVGALPAIARNLQVSLVLVGTLLSWYALVAALTTIPLVRW
TAHLPRRRVLVASLTCLTASQLISALAPNFAVLAAGRVLCAITHGLLWSVIAPIATRLVPPSHAGRATMSIYVGTSLALV
VGSPLTAALSLMWGWRLAVVCVTVAAAVVTVAARLMLPEMVLTEHQLAHVGPRSRHHRNGRLITVSLLAMVAVTGHFVSY
TFIVEIIRNVVGVRGPTLAWVLAAYGLAGLLSVPLVARPLDHRPKSAVILCMTGLTAAFAVLTALAFGGPTGATTALIGT
AAIVLWGAMATAVSPMMQSAAMRNGADDPDGASGLYVTAFQVGIMAGSLLGGLLYERSVILMLSASGVLMAVALVGIAAN
RRMLDVAPTSSRDS

Sequences:

>Translated_414_residues
MTVMTAETANAAARTWTPRIAAQLAILAAAAFTYVTAEILPVGALPAIARNLQVSLVLVGTLLSWYALVAALTTIPLVRW
TAHLPRRRVLVASLTCLTASQLISALAPNFAVLAAGRVLCAITHGLLWSVIAPIATRLVPPSHAGRATMSIYVGTSLALV
VGSPLTAALSLMWGWRLAVVCVTVAAAVVTVAARLMLPEMVLTEHQLAHVGPRSRHHRNGRLITVSLLAMVAVTGHFVSY
TFIVEIIRNVVGVRGPTLAWVLAAYGLAGLLSVPLVARPLDHRPKSAVILCMTGLTAAFAVLTALAFGGPTGATTALIGT
AAIVLWGAMATAVSPMMQSAAMRNGADDPDGASGLYVTAFQVGIMAGSLLGGLLYERSVILMLSASGVLMAVALVGIAAN
RRMLDVAPTSSRDS
>Mature_413_residues
TVMTAETANAAARTWTPRIAAQLAILAAAAFTYVTAEILPVGALPAIARNLQVSLVLVGTLLSWYALVAALTTIPLVRWT
AHLPRRRVLVASLTCLTASQLISALAPNFAVLAAGRVLCAITHGLLWSVIAPIATRLVPPSHAGRATMSIYVGTSLALVV
GSPLTAALSLMWGWRLAVVCVTVAAAVVTVAARLMLPEMVLTEHQLAHVGPRSRHHRNGRLITVSLLAMVAVTGHFVSYT
FIVEIIRNVVGVRGPTLAWVLAAYGLAGLLSVPLVARPLDHRPKSAVILCMTGLTAAFAVLTALAFGGPTGATTALIGTA
AIVLWGAMATAVSPMMQSAAMRNGADDPDGASGLYVTAFQVGIMAGSLLGGLLYERSVILMLSASGVLMAVALVGIAANR
RMLDVAPTSSRDS

Specific function: L-arabinose and isopropyl-b-D-thiogalactopyranoside exporter protein [C]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=346, Percent_Identity=28.0346820809249, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787947, Length=354, Percent_Identity=24.8587570621469, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693198, Length=407, Percent_Identity=26.7813267813268, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42907; Mature: 42775

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVMTAETANAAARTWTPRIAAQLAILAAAAFTYVTAEILPVGALPAIARNLQVSLVLVG
CCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TLLSWYALVAALTTIPLVRWTAHLPRRRVLVASLTCLTASQLISALAPNFAVLAAGRVLC
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AITHGLLWSVIAPIATRLVPPSHAGRATMSIYVGTSLALVVGSPLTAALSLMWGWRLAVV
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEHHCCCHHHHHHHHHHHHHHHH
CVTVAAAVVTVAARLMLPEMVLTEHQLAHVGPRSRHHRNGRLITVSLLAMVAVTGHFVSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
TFIVEIIRNVVGVRGPTLAWVLAAYGLAGLLSVPLVARPLDHRPKSAVILCMTGLTAAFA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEHHHHHHHHH
VLTALAFGGPTGATTALIGTAAIVLWGAMATAVSPMMQSAAMRNGADDPDGASGLYVTAF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
QVGIMAGSLLGGLLYERSVILMLSASGVLMAVALVGIAANRRMLDVAPTSSRDS
HHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCC
>Mature Secondary Structure 
TVMTAETANAAARTWTPRIAAQLAILAAAAFTYVTAEILPVGALPAIARNLQVSLVLVG
CEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TLLSWYALVAALTTIPLVRWTAHLPRRRVLVASLTCLTASQLISALAPNFAVLAAGRVLC
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AITHGLLWSVIAPIATRLVPPSHAGRATMSIYVGTSLALVVGSPLTAALSLMWGWRLAVV
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEHHCCCHHHHHHHHHHHHHHHH
CVTVAAAVVTVAARLMLPEMVLTEHQLAHVGPRSRHHRNGRLITVSLLAMVAVTGHFVSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
TFIVEIIRNVVGVRGPTLAWVLAAYGLAGLLSVPLVARPLDHRPKSAVILCMTGLTAAFA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEHHHHHHHHH
VLTALAFGGPTGATTALIGTAAIVLWGAMATAVSPMMQSAAMRNGADDPDGASGLYVTAF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
QVGIMAGSLLGGLLYERSVILMLSASGVLMAVALVGIAANRRMLDVAPTSSRDS
HHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]