| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409678
Identifier: 41409678
GI number: 41409678
Start: 3978510
End: 3979334
Strand: Reverse
Name: 41409678
Synonym: MAP3580c
Alternate gene names: NA
Gene position: 3979334-3978510 (Counterclockwise)
Preceding gene: 41409679
Following gene: 41409677
Centisome position: 82.39
GC content: 71.64
Gene sequence:
>825_bases TTGACGATGACCGACGCCTACTACGAGCTGATCGACTCCAACGCGTCGGGCGAGAGGTTCCGGGCCACCGATCTGGCGCG CGGCACCTGGTCGGCGACGATCCAGCACGGCGGTCCGGTATCGGCGCTGCTGACGCGGGCCCTGGAGCGCTGCGAGCAGC GCGACGACACCCGGCTGTCCCGGGTGGTGATCGACCTGCTGGGTGGGGTGCCGGTCGAGGGCGACCTGTGGGTGCGCGCG GAGGTGCAGCGCCCCGGCAAGCAGATCGAACTGCTCGGCGCCCAGATGCTGGCGCCGGGGCCCGACGGCGCCCCGCGGCC GGTGGCGCGCGCCAGCGGCTGGCGGTTGCAGCACCAGGACACCGGATCCCTGGCGCACGCGGCGGCGCCGCTGCCGCGTC CGCGGGCCGAGGCCTACGACCGCAACCTCAAGGCGCGCGACTGGGACCGCAACTACGTGCACAGCCTGCAGTGGCTGTGG TTGACCGAGCCGCTGAGCGAGGGCCCCGGGGAATCCTGGATCAGCCCGACCGTCGACCTGGTGAAGGGCGAATCGATGAC CCGGCTACAGCGGCTGTTCGCGGTGGCCGACTGCGCCAACGGCATCGGCAGCAAGCTGGACATCACCAAGTGGACGTTCC TCAACACCGATCTGGCCGTGCACGTGTTCCGGGTCCCCGACGGCGACTGGATCGGCATCCGGGCCGAGACCAGCTACGGG CCGGACGGGATCGGCACGACGATCGGCACGTTGTTCGACGAGCAGGGCGCCGTGGGCGCCATCCAGCAGTCGGTTCTGGT GCGCCGGCGTCCCGGTCGGGCCTAA
Upstream 100 bases:
>100_bases GACGCCTATCCTCAGCGTCTGGTCGGCACCCGCCTGTCCCGGTTGGATGCCGTCACGGTGACCACGCCCGGCGCCGGCCT GCCCTGACTTTCCGGAGAGG
Downstream 100 bases:
>100_bases CGTGGGAGCGAATGACCATGACACCGCGGCGACACTTCGTAAAGTTTGAATCATGAGCCACCCGGTCCGGGCGACGGCGA TCGCCGACACCGACACCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MTMTDAYYELIDSNASGERFRATDLARGTWSATIQHGGPVSALLTRALERCEQRDDTRLSRVVIDLLGGVPVEGDLWVRA EVQRPGKQIELLGAQMLAPGPDGAPRPVARASGWRLQHQDTGSLAHAAAPLPRPRAEAYDRNLKARDWDRNYVHSLQWLW LTEPLSEGPGESWISPTVDLVKGESMTRLQRLFAVADCANGIGSKLDITKWTFLNTDLAVHVFRVPDGDWIGIRAETSYG PDGIGTTIGTLFDEQGAVGAIQQSVLVRRRPGRA
Sequences:
>Translated_274_residues MTMTDAYYELIDSNASGERFRATDLARGTWSATIQHGGPVSALLTRALERCEQRDDTRLSRVVIDLLGGVPVEGDLWVRA EVQRPGKQIELLGAQMLAPGPDGAPRPVARASGWRLQHQDTGSLAHAAAPLPRPRAEAYDRNLKARDWDRNYVHSLQWLW LTEPLSEGPGESWISPTVDLVKGESMTRLQRLFAVADCANGIGSKLDITKWTFLNTDLAVHVFRVPDGDWIGIRAETSYG PDGIGTTIGTLFDEQGAVGAIQQSVLVRRRPGRA >Mature_273_residues TMTDAYYELIDSNASGERFRATDLARGTWSATIQHGGPVSALLTRALERCEQRDDTRLSRVVIDLLGGVPVEGDLWVRAE VQRPGKQIELLGAQMLAPGPDGAPRPVARASGWRLQHQDTGSLAHAAAPLPRPRAEAYDRNLKARDWDRNYVHSLQWLWL TEPLSEGPGESWISPTVDLVKGESMTRLQRLFAVADCANGIGSKLDITKWTFLNTDLAVHVFRVPDGDWIGIRAETSYGP DGIGTTIGTLFDEQGAVGAIQQSVLVRRRPGRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30103; Mature: 29972
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTDAYYELIDSNASGERFRATDLARGTWSATIQHGGPVSALLTRALERCEQRDDTRLS CCCCHHHHHHHCCCCCCCEEEHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH RVVIDLLGGVPVEGDLWVRAEVQRPGKQIELLGAQMLAPGPDGAPRPVARASGWRLQHQD HHHHHHHCCCCCCCCEEEEEECCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCC TGSLAHAAAPLPRPRAEAYDRNLKARDWDRNYVHSLQWLWLTEPLSEGPGESWISPTVDL CCCHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHEEEEEEECCHHCCCCCCCCCCCHHH VKGESMTRLQRLFAVADCANGIGSKLDITKWTFLNTDLAVHVFRVPDGDWIGIRAETSYG HCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCC PDGIGTTIGTLFDEQGAVGAIQQSVLVRRRPGRA CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure TMTDAYYELIDSNASGERFRATDLARGTWSATIQHGGPVSALLTRALERCEQRDDTRLS CCCHHHHHHHCCCCCCCEEEHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH RVVIDLLGGVPVEGDLWVRAEVQRPGKQIELLGAQMLAPGPDGAPRPVARASGWRLQHQD HHHHHHHCCCCCCCCEEEEEECCCCCCEEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCC TGSLAHAAAPLPRPRAEAYDRNLKARDWDRNYVHSLQWLWLTEPLSEGPGESWISPTVDL CCCHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHEEEEEEECCHHCCCCCCCCCCCHHH VKGESMTRLQRLFAVADCANGIGSKLDITKWTFLNTDLAVHVFRVPDGDWIGIRAETSYG HCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCC PDGIGTTIGTLFDEQGAVGAIQQSVLVRRRPGRA CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA