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The map label for this gene is lytR [H]

Identifier: 41409663

GI number: 41409663

Start: 3963974

End: 3965524

Strand: Direct

Name: lytR [H]

Synonym: MAP3565

Alternate gene names: 41409663

Gene position: 3963974-3965524 (Clockwise)

Preceding gene: 41409662

Following gene: 41409664

Centisome position: 82.07

GC content: 71.63

Gene sequence:

>1551_bases
ATGGGCAGCGCTGGAACCGGTCACCCGCGCCGCTGGGTGCTGTTGAAGGGGCGGCTCGTCGCCAGCGTCGCGTCGGCGTT
CGTCATGGCCGTCACCGGTGTCGGCTGGACCGGCTATCACACCGCGCTGGGCCGGATCATCATCTCGCATGCCCTGCCCA
ACGGGGCGATGTCGCTCGGCGACAACCAGAACATCCTGCTGATGGGCCTGGACAGCCGGTTGGACCAGAACGGCCGGCCG
CTGCCGCCGGAAATCTACGACGCGCTGCACGCCGGCGACGAAAGCTCCGGCGGCTACAACGCCAATGTCCTTATCATCGT
TCATCTTTCGGATGGTGACGGGCCCGTCACCGCGGTGTCGATCCCGCGCGACGACTACGCCGAGTTGCCGGGCTGCCCGG
GATCGGTGTGTGCCGGCAAGATCAAACAGGCCTACGGGCTGGCCTATCAGCAGTCGCTGAATGCGCAGGCCGCCGGGAAT
TCCGGCGCCGGGGCCACCGACCTGGCCGCTCGCGAGCAGACCGCCCGCGAGGCCGGCCGCAAGGCCGAGATCGGCGCCGT
CACCGACTTTCTGGGCATCTCGGTCGACCACTTCGTCGAGGTCACCCTGGGCGCCTTCTTCCAGATCGCCAAGGCGGTCG
AGCCGATCACGGTGTGCCTGGCCGGCGACACCCGGGACAGCTATTCGGGGGCCGACTTCCACCAGGGCGTGCAGCGCATC
GACGCGGCCGAGGCGATGGCCTTCGTGAGGCAGCGGCGCGACGAAAACGACGGCTCCTTCACCGATTTCGACCGGACCCG
CCGCCAGCAGGCGTTCCTGGTTTCGCTGGTCGAGGCGGCGCGCAGCGGCGGCGCGCTGTCCAGTGTCAGCGGGTTGCGCA
AGCTGCTGCAGGTCGCCCGGGACAACGTCGCCGTCGACGCCGGGCTGGACCTGATGCAGTTCGCCGCGCGGGCCTCGCAA
CTGGCCGGGCGGCCGCTGTCGCTGTACACCCTGCCGATCTCGGGCTTCGGCAAGGACCCCAACGGCTCCGACATCAACCT
GGTCGACCTTCCCACGATCCGGCGCATCGTCAACGAACGCTTCATGTCCGACGCGCCGGCCGCGCTGGACGCGGCGGTCC
CGGGCTCCCAGCCGCCGCCCGCCCCCGCCGAGCCCGCGGTCCTCGACGTCGTCAACGCCACCACACACGACGGGCTGGCC
GCCGCCCTCGAGGAGGCGCTGGCCGGCCGCGGGTTCACCCGGGGCAGCGCCACGACTGCCCCCACCCAGGCCGAGGACAG
CAGCATCGAATACGGCCCCGGCGCCGAGGCGGCCGCGCGGCTGCTGGCCGACCAACTGCACCTGCCGGCCACCGCGCAGA
GCGCGGTCGCGCCCGGCACCGTGCGGCTGACCGTCGGCACCGCGTTCCCGGCCGCCGACTACCTCGCCCATCCCGGCGCC
TCGGGGTCGGGACAGGTGAGCACGGTGTCCGCCACCGGCACCGGCGATCACGCCCCCGCGCCGACCGACCTCAGCCAGAT
GACGGCCACCAGCGTCCCCTGCGTCAAGTAA

Upstream 100 bases:

>100_bases
ACTTCGTCGTCGCCGAGCGCCGCTAAGGGGCATTCCCGGCTGGCGCGCGGCCCCGGTTACCGGGATTTGACCTGGTCATC
GGGAACAATGGTCAGCCATT

Downstream 100 bases:

>100_bases
CCGCGGGGCGCTGCCGCGGGCCGGATCCTTCCTATTGCTCTCCCAACCAGATGGTTAGGATCGCGGTTATCACCGATGAG
CGGCCGCCGCGCAGCGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MGSAGTGHPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHALPNGAMSLGDNQNILLMGLDSRLDQNGRP
LPPEIYDALHAGDESSGGYNANVLIIVHLSDGDGPVTAVSIPRDDYAELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGN
SGAGATDLAAREQTAREAGRKAEIGAVTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRI
DAAEAMAFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVARDNVAVDAGLDLMQFAARASQ
LAGRPLSLYTLPISGFGKDPNGSDINLVDLPTIRRIVNERFMSDAPAALDAAVPGSQPPPAPAEPAVLDVVNATTHDGLA
AALEEALAGRGFTRGSATTAPTQAEDSSIEYGPGAEAAARLLADQLHLPATAQSAVAPGTVRLTVGTAFPAADYLAHPGA
SGSGQVSTVSATGTGDHAPAPTDLSQMTATSVPCVK

Sequences:

>Translated_516_residues
MGSAGTGHPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHALPNGAMSLGDNQNILLMGLDSRLDQNGRP
LPPEIYDALHAGDESSGGYNANVLIIVHLSDGDGPVTAVSIPRDDYAELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGN
SGAGATDLAAREQTAREAGRKAEIGAVTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRI
DAAEAMAFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVARDNVAVDAGLDLMQFAARASQ
LAGRPLSLYTLPISGFGKDPNGSDINLVDLPTIRRIVNERFMSDAPAALDAAVPGSQPPPAPAEPAVLDVVNATTHDGLA
AALEEALAGRGFTRGSATTAPTQAEDSSIEYGPGAEAAARLLADQLHLPATAQSAVAPGTVRLTVGTAFPAADYLAHPGA
SGSGQVSTVSATGTGDHAPAPTDLSQMTATSVPCVK
>Mature_515_residues
GSAGTGHPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHALPNGAMSLGDNQNILLMGLDSRLDQNGRPL
PPEIYDALHAGDESSGGYNANVLIIVHLSDGDGPVTAVSIPRDDYAELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGNS
GAGATDLAAREQTAREAGRKAEIGAVTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRID
AAEAMAFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVARDNVAVDAGLDLMQFAARASQL
AGRPLSLYTLPISGFGKDPNGSDINLVDLPTIRRIVNERFMSDAPAALDAAVPGSQPPPAPAEPAVLDVVNATTHDGLAA
ALEEALAGRGFTRGSATTAPTQAEDSSIEYGPGAEAAARLLADQLHLPATAQSAVAPGTVRLTVGTAFPAADYLAHPGAS
GSGQVSTVSATGTGDHAPAPTDLSQMTATSVPCVK

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 53182; Mature: 53051

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSAGTGHPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHALPNGAMSLG
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECC
DNQNILLMGLDSRLDQNGRPLPPEIYDALHAGDESSGGYNANVLIIVHLSDGDGPVTAVS
CCCCEEEEECCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
IPRDDYAELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGNSGAGATDLAAREQTAREAGR
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
KAEIGAVTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRI
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
DAAEAMAFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVAR
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DNVAVDAGLDLMQFAARASQLAGRPLSLYTLPISGFGKDPNGSDINLVDLPTIRRIVNER
CCEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHH
FMSDAPAALDAAVPGSQPPPAPAEPAVLDVVNATTHDGLAAALEEALAGRGFTRGSATTA
HHCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PTQAEDSSIEYGPGAEAAARLLADQLHLPATAQSAVAPGTVRLTVGTAFPAADYLAHPGA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCCCHHHHHCCCC
SGSGQVSTVSATGTGDHAPAPTDLSQMTATSVPCVK
CCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
GSAGTGHPRRWVLLKGRLVASVASAFVMAVTGVGWTGYHTALGRIIISHALPNGAMSLG
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECC
DNQNILLMGLDSRLDQNGRPLPPEIYDALHAGDESSGGYNANVLIIVHLSDGDGPVTAVS
CCCCEEEEECCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCEEEEE
IPRDDYAELPGCPGSVCAGKIKQAYGLAYQQSLNAQAAGNSGAGATDLAAREQTAREAGR
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
KAEIGAVTDFLGISVDHFVEVTLGAFFQIAKAVEPITVCLAGDTRDSYSGADFHQGVQRI
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
DAAEAMAFVRQRRDENDGSFTDFDRTRRQQAFLVSLVEAARSGGALSSVSGLRKLLQVAR
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DNVAVDAGLDLMQFAARASQLAGRPLSLYTLPISGFGKDPNGSDINLVDLPTIRRIVNER
CCEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHH
FMSDAPAALDAAVPGSQPPPAPAEPAVLDVVNATTHDGLAAALEEALAGRGFTRGSATTA
HHCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PTQAEDSSIEYGPGAEAAARLLADQLHLPATAQSAVAPGTVRLTVGTAFPAADYLAHPGA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCCCHHHHHCCCC
SGSGQVSTVSATGTGDHAPAPTDLSQMTATSVPCVK
CCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]