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The map label for this gene is lytR [H]

Identifier: 41409479

GI number: 41409479

Start: 3754607

End: 3756079

Strand: Direct

Name: lytR [H]

Synonym: MAP3381

Alternate gene names: 41409479

Gene position: 3754607-3756079 (Clockwise)

Preceding gene: 41409475

Following gene: 41409480

Centisome position: 77.74

GC content: 69.93

Gene sequence:

>1473_bases
ATGCCTGTGCAACGTGTGGTTCGTGTGATTGCAACCGCGCTGACGCTCGCGGTCGTGCTCGGCACCGGGATCGCGTGGAG
CAACGTCCGGTCCTTCGAAGACGGCATCTTTCACATGTCGGCGCCGTCGCTGGGCAAGGGCGGCGACGACGGCGCGATCG
ACATCCTGCTGGTGGGCCTGGACAGCCGGACCGACGCGCACGGCAACCCGCTGTCGCAGCAGGAGCTGGAGACGCTGCGG
GCCGGCGACGAGGAGGCCACCAACACCGACACCATCATCCTGATCCGCATCCCCAACAACGGGAAGTCGGCGACCGCGAT
CTCGATCCCGCGCGACTCCTACGTCGCCGCCCCGGGGCTGGGCAAGACCAAGATCAACGGTGTCTACGGTCAGACCCGGG
AGGCCAAGCGCGCCAGCCTGGTCAAGGCCGGCGACTCGGCCGAAGACGCCGCGGCCCAGGGCACCGAGGCCGGTCGTGAG
GCGCTGATCAAGACCGTCGCCGACCTCACCGGCGTCACCGTCGACCACTACGCCGAGATCGGCCTGCTTGGTTTCGCGCT
GATCACCGACGCGCTCGGCGGCGTCGACGTGTGCCTCAAAGAGCCGGTGTTCGAACCGCTTTCGGGTGCCGACTTCCCGG
CCGGCCCGCAGCGGCTCAGCGGCCCGGAGGCGCTGAGCTTCGTGCGCCAGCGCCACGAACTGCCGCGCGGCGACCTGGAC
CGGGTGGTGCGCCAGCAGGTGGTGATGGCCTCGCTGGCGCACCGGGTCATCTCCGGGCAGACGCTGTCCAGCCCCGCCAC
GGTCAAGCGGCTGGAGGCCGCGGTTCAGCGCTCGGTGGTGATCTCCGCGGGCTGGGACGTGATGGACTTCGTGCAGCAGA
TGCAGAAGCTGGCCGGCGGCAACGTCGCGTTCGCCACCATCCCGGTGCTGGACGGCGCCGGCTGGAGCGACGACGGCATG
CAGAGCGTGGTGCGGGTGGACCCGCACCAGGTCGCCGACTGGGTGGGCAGCCTGCTGCACGACCAGGAGCAGGGCAAGAC
CGAGGAGATCGCCTACACCCCGGCCAAGACCACCGCCAGCGTCGTCAACGACACCGACATCAACGGTCTGGCCGCGGCCG
TCTCGGATGTGTTGAGCGCCAAGGGCTTTGCCACCGGCACGGTGGGCAACAACGACGGGGGGCACGTCAAGACCAGCCAG
GTGCGCGCCGCCAAGAGCGACGACCTGGGCGCCAAAGAGGTGTCCAAGGAACTGGGCGGGTTGCCGGTGGTGGCCGACAG
CTCGCTGGCGCCGGGCGCGGTGCGGGTGGTGCTGGCCAACGACTACAGCGGTCCCGGCTCGGGCCTGTCGGGCACCGAAT
CGATCATGCCCGCCAAGGTGTCCACCGCCGGCGCGGTGAGCACCAACGACAAGGCGCCCGCGCCGTCGCCGATCCTGACC
GCCGGCTCCGACAAGCCGGAGTGCATAAACTAG

Upstream 100 bases:

>100_bases
ATGGTTCGAGTTTGGCATGAGGCCTCGGGCCGCCGGGACGGCCGGGGCACGCGGGCGCCGGCTACCCGTGAAGCCAGTGT
GTCGCAAGTAATGTAGTGGG

Downstream 100 bases:

>100_bases
CGCCGGTGCGCCAATCGAGCACGCTGTCCGCGGCGATCCTGGATCCCATGCTGCGGGCCGACCCGGTCGGTCCGCGCATC
ACCTACTACGACGACGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MPVQRVVRVIATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGLDSRTDAHGNPLSQQELETLR
AGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTREAKRASLVKAGDSAEDAAAQGTEAGRE
ALIKTVADLTGVTVDHYAEIGLLGFALITDALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLD
RVVRQQVVMASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGGNVAFATIPVLDGAGWSDDGM
QSVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTPAKTTASVVNDTDINGLAAAVSDVLSAKGFATGTVGNNDGGHVKTSQ
VRAAKSDDLGAKEVSKELGGLPVVADSSLAPGAVRVVLANDYSGPGSGLSGTESIMPAKVSTAGAVSTNDKAPAPSPILT
AGSDKPECIN

Sequences:

>Translated_490_residues
MPVQRVVRVIATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGLDSRTDAHGNPLSQQELETLR
AGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTREAKRASLVKAGDSAEDAAAQGTEAGRE
ALIKTVADLTGVTVDHYAEIGLLGFALITDALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLD
RVVRQQVVMASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGGNVAFATIPVLDGAGWSDDGM
QSVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTPAKTTASVVNDTDINGLAAAVSDVLSAKGFATGTVGNNDGGHVKTSQ
VRAAKSDDLGAKEVSKELGGLPVVADSSLAPGAVRVVLANDYSGPGSGLSGTESIMPAKVSTAGAVSTNDKAPAPSPILT
AGSDKPECIN
>Mature_489_residues
PVQRVVRVIATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGLDSRTDAHGNPLSQQELETLRA
GDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTREAKRASLVKAGDSAEDAAAQGTEAGREA
LIKTVADLTGVTVDHYAEIGLLGFALITDALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLDR
VVRQQVVMASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGGNVAFATIPVLDGAGWSDDGMQ
SVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTPAKTTASVVNDTDINGLAAAVSDVLSAKGFATGTVGNNDGGHVKTSQV
RAAKSDDLGAKEVSKELGGLPVVADSSLAPGAVRVVLANDYSGPGSGLSGTESIMPAKVSTAGAVSTNDKAPAPSPILTA
GSDKPECIN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 50602; Mature: 50471

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVQRVVRVIATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGL
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEC
DSRTDAHGNPLSQQELETLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEECCCC
GKTKINGVYGQTREAKRASLVKAGDSAEDAAAQGTEAGREALIKTVADLTGVTVDHYAEI
CCCEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
GLLGFALITDALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLD
HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
RVVRQQVVMASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGG
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHCCC
NVAFATIPVLDGAGWSDDGMQSVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTPAKTTAS
CEEEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
VVNDTDINGLAAAVSDVLSAKGFATGTVGNNDGGHVKTSQVRAAKSDDLGAKEVSKELGG
HHCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCEEHHHHHCCCCCCCCHHHHHHHHCC
LPVVADSSLAPGAVRVVLANDYSGPGSGLSGTESIMPAKVSTAGAVSTNDKAPAPSPILT
CCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
AGSDKPECIN
CCCCCCCCCC
>Mature Secondary Structure 
PVQRVVRVIATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGL
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEC
DSRTDAHGNPLSQQELETLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEECCCC
GKTKINGVYGQTREAKRASLVKAGDSAEDAAAQGTEAGREALIKTVADLTGVTVDHYAEI
CCCEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
GLLGFALITDALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLD
HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
RVVRQQVVMASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGG
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHCCC
NVAFATIPVLDGAGWSDDGMQSVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTPAKTTAS
CEEEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
VVNDTDINGLAAAVSDVLSAKGFATGTVGNNDGGHVKTSQVRAAKSDDLGAKEVSKELGG
HHCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCEEHHHHHCCCCCCCCHHHHHHHHCC
LPVVADSSLAPGAVRVVLANDYSGPGSGLSGTESIMPAKVSTAGAVSTNDKAPAPSPILT
CCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
AGSDKPECIN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]