| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409437
Identifier: 41409437
GI number: 41409437
Start: 3708087
End: 3709229
Strand: Reverse
Name: 41409437
Synonym: MAP3339c
Alternate gene names: NA
Gene position: 3709229-3708087 (Counterclockwise)
Preceding gene: 41409441
Following gene: 41409434
Centisome position: 76.8
GC content: 67.1
Gene sequence:
>1143_bases ATGAGCGGTCAATGTAGCGACGACATCGAGCGCATCGCCAACCGGCTCGGGTTCGGCTGTGAGCACGCCGCACCGTGGGT GACGCTGAGAAACCCGTTCGGACTGGCGAATTGGACGCTGCCGGTGCTCGAGCTGCTGATGGTCGCGGGCGCGGTGCTGG CGCTGTGGTGGGCGATTCGCCGGCTGCGGCGCGACCGCGATCCCGTCAACATCGTGATCTGGTTCGCCACGGTGATCTAC CTGCTGATCGTGGAGCCGCCGCTGTACTTCCCGACGGTCTTCCGCGTCGACGGCACCATCGGTGCGGTCTTCGCGCACAA CGTCTTCACGGTGCAGTTCATGTACGACCGGCTGCCGCTCTACATCGTCGGGCTCTATCCCGCGATGCTGACCCTGGCCT ACGAAGTGGTGCGCAGCCTCGGCGTGTTCCGGGACTGGGGCGCGATCGTCGGCGCGGTGTGCGTGGGGTTCGTGCACAAC TGCTACTACGAGATCTTCGACCAGCTGGGTCCGCAACTGCGCTGGTGGGCGTGGAACGCCGACAACGCGATCAACCGCCC GATGCTGGCGTCGGTGCCGCTGAGCAGCGTCCTGCTCTTCGCCACGGTCGGGCCGGCCTGCGTTGCGCTGTTCGCCCAGC TGCTGGTGACCCGCCCGATCGAGCGGGGCCGCCGGCTGAGCCGAATTGCCTTGACCGGCCGCACATTCGGCGTGGCCGTG CTGGTACCGGTCGGACTGGTCGTCGCCAACGTCCCGATACTGCTGACCGGCGGCCAGCATCCCGACGGTGGGTTGCGGCG GGCGCTGTACTTCGCTCTTCTGGCCGTGTTCGCCGTGGTGGCCATCCCGGTGCTGTTGCGGCAGTGGCGCAATGCCGCGT TCACACCGAGCGCGCCCAACACCTTCGTCGCGATCTTCGGATCCGCGTATTTGCTTGTTCTCGGGTCGCTGTGGGTGTTG GCCATGCCCGCCTACCTGAACGCCGCGCACGGGCTCACCCGTGATGGAACGCCGACCGGCAGCCTGGCCTACGCACTGGT GTGCTTCGTGCTCGCGGTGGGCCTGACCGTTTCGGTGACGGTTCCCGTGGGTCGTCTAAGCGGTTTCCTCCGGCGAACCG ACCGGCGCGAGGTAATGCCATGA
Upstream 100 bases:
>100_bases AGCTGGACAGTGGCGATACACATTTGTTAGACATGTATCGTCAAGCTTTCGGTAAGCGCGTGCAGCTTGTGCGTGCGCCT GGAACTGAGGACGCCCGACG
Downstream 100 bases:
>100_bases CAGAGCGGCGTGGACGCACGGGATTTCGCCCCGTGGCGCGGCCTGACGCCGAGGCGTGATGCCGGTCCCGGTCCGCGGGT GCGGCCCGCGCTGCACACGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MSGQCSDDIERIANRLGFGCEHAAPWVTLRNPFGLANWTLPVLELLMVAGAVLALWWAIRRLRRDRDPVNIVIWFATVIY LLIVEPPLYFPTVFRVDGTIGAVFAHNVFTVQFMYDRLPLYIVGLYPAMLTLAYEVVRSLGVFRDWGAIVGAVCVGFVHN CYYEIFDQLGPQLRWWAWNADNAINRPMLASVPLSSVLLFATVGPACVALFAQLLVTRPIERGRRLSRIALTGRTFGVAV LVPVGLVVANVPILLTGGQHPDGGLRRALYFALLAVFAVVAIPVLLRQWRNAAFTPSAPNTFVAIFGSAYLLVLGSLWVL AMPAYLNAAHGLTRDGTPTGSLAYALVCFVLAVGLTVSVTVPVGRLSGFLRRTDRREVMP
Sequences:
>Translated_380_residues MSGQCSDDIERIANRLGFGCEHAAPWVTLRNPFGLANWTLPVLELLMVAGAVLALWWAIRRLRRDRDPVNIVIWFATVIY LLIVEPPLYFPTVFRVDGTIGAVFAHNVFTVQFMYDRLPLYIVGLYPAMLTLAYEVVRSLGVFRDWGAIVGAVCVGFVHN CYYEIFDQLGPQLRWWAWNADNAINRPMLASVPLSSVLLFATVGPACVALFAQLLVTRPIERGRRLSRIALTGRTFGVAV LVPVGLVVANVPILLTGGQHPDGGLRRALYFALLAVFAVVAIPVLLRQWRNAAFTPSAPNTFVAIFGSAYLLVLGSLWVL AMPAYLNAAHGLTRDGTPTGSLAYALVCFVLAVGLTVSVTVPVGRLSGFLRRTDRREVMP >Mature_379_residues SGQCSDDIERIANRLGFGCEHAAPWVTLRNPFGLANWTLPVLELLMVAGAVLALWWAIRRLRRDRDPVNIVIWFATVIYL LIVEPPLYFPTVFRVDGTIGAVFAHNVFTVQFMYDRLPLYIVGLYPAMLTLAYEVVRSLGVFRDWGAIVGAVCVGFVHNC YYEIFDQLGPQLRWWAWNADNAINRPMLASVPLSSVLLFATVGPACVALFAQLLVTRPIERGRRLSRIALTGRTFGVAVL VPVGLVVANVPILLTGGQHPDGGLRRALYFALLAVFAVVAIPVLLRQWRNAAFTPSAPNTFVAIFGSAYLLVLGSLWVLA MPAYLNAAHGLTRDGTPTGSLAYALVCFVLAVGLTVSVTVPVGRLSGFLRRTDRREVMP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41751; Mature: 41620
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGQCSDDIERIANRLGFGCEHAAPWVTLRNPFGLANWTLPVLELLMVAGAVLALWWAIR CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLRRDRDPVNIVIWFATVIYLLIVEPPLYFPTVFRVDGTIGAVFAHNVFTVQFMYDRLPL HHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHEEHHHHHCCCH YIVGLYPAMLTLAYEVVRSLGVFRDWGAIVGAVCVGFVHNCYYEIFDQLGPQLRWWAWNA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC DNAINRPMLASVPLSSVLLFATVGPACVALFAQLLVTRPIERGRRLSRIALTGRTFGVAV CCCCCCCCEECCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCHHHHHEECCCHHHHHH LVPVGLVVANVPILLTGGQHPDGGLRRALYFALLAVFAVVAIPVLLRQWRNAAFTPSAPN HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TFVAIFGSAYLLVLGSLWVLAMPAYLNAAHGLTRDGTPTGSLAYALVCFVLAVGLTVSVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE VPVGRLSGFLRRTDRREVMP ECHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SGQCSDDIERIANRLGFGCEHAAPWVTLRNPFGLANWTLPVLELLMVAGAVLALWWAIR CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLRRDRDPVNIVIWFATVIYLLIVEPPLYFPTVFRVDGTIGAVFAHNVFTVQFMYDRLPL HHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHEEHHHHHCCCH YIVGLYPAMLTLAYEVVRSLGVFRDWGAIVGAVCVGFVHNCYYEIFDQLGPQLRWWAWNA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC DNAINRPMLASVPLSSVLLFATVGPACVALFAQLLVTRPIERGRRLSRIALTGRTFGVAV CCCCCCCCEECCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCHHHHHEECCCHHHHHH LVPVGLVVANVPILLTGGQHPDGGLRRALYFALLAVFAVVAIPVLLRQWRNAAFTPSAPN HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TFVAIFGSAYLLVLGSLWVLAMPAYLNAAHGLTRDGTPTGSLAYALVCFVLAVGLTVSVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE VPVGRLSGFLRRTDRREVMP ECHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA