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The map label for this gene is ybbK [C]

Identifier: 41409281

GI number: 41409281

Start: 3533239

End: 3534036

Strand: Direct

Name: ybbK [C]

Synonym: MAP3183

Alternate gene names: 41409281

Gene position: 3533239-3534036 (Clockwise)

Preceding gene: 41409280

Following gene: 41409282

Centisome position: 73.16

GC content: 66.42

Gene sequence:

>798_bases
ATGACCACCTTGGTGATCGCGCTGATCGGCGCCGGGATCGTGGTGCTCGTCGTCCTGGGTTTCTGGTCGCTGGTGGTGCT
GCGCGAATACGAACGCGGCGTGGTGTTCCGGATGGGGCATGTCCGCCCGCTCTACGGTCCCGGATTGCGGTTTCTGATTC
CGCTGCTGGACAAGATGATTCGGGTCGACCAGCGGCTGGTGACACTGACCATCCCACCGCAGGAGGTGATCACCCGCGAC
AACGTGCCGGCCCGGGTCAACGCGGTGGTGATGTTCCAGGTGACCGATCCACGCAAGGCGATTCTGGCGGTGGAGAACTA
CGCGGTCGCCACCTCGCAGATCGCCCAGACCACGCTGCGTTCGCTGCTCGGCCGGGCCGACCTGGACACGCTGCTGGCGC
ACCGCGAGGACCTCAACAACGACCTGCGCACCATCATCGACAAGCAGACCGAACCATGGGGCGTGCAGGTGCACGTGGTG
GAGATCAAGGACGTGGAGATCCCCGAGTCGATGCAACGGGCGATGGCTCGCGAGGCCGAAGCCGAACGCGAACGGCGCGC
CAAGGTCATCAACGCGCGCGGCGAGCTGCAGGCGTCCGAGGAGCTGCGCGAGGCCGCCGAGACCCTGTCGAAGAGCCCGG
CGTCGCTGCAGCTGCGTTATCTGCAGACGCTGCTGGAGTTGGGCGCCGACCAGAACTCGACGGTCGTCTTCCCGCTGCCG
GTCGACATCATCACCCCCTTTCTGCGCAACCCGGGGCTGCTACAGGGCGTGGTCGACAACGTCGGCCGTCCCGGGTGA

Upstream 100 bases:

>100_bases
ACCTGCCGCACCGCACCGCGATCGAGGACCAGGTGGCCGCGGCGATCGACCGGTACTCCACCCGCTGGGGCGGCTGGAAG
AGCAAGGAGGACAACGCAAC

Downstream 100 bases:

>100_bases
CCGCTGCCCGCTTACCTCTTAGGCGCACGCCAAATAACAAGCGTGCCAAACACTTTGGGTATCAGTGGGGCGCCGGGCGG
GTCGGGCGGTAGGTTAACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTTLVIALIGAGIVVLVVLGFWSLVVLREYERGVVFRMGHVRPLYGPGLRFLIPLLDKMIRVDQRLVTLTIPPQEVITRD
NVPARVNAVVMFQVTDPRKAILAVENYAVATSQIAQTTLRSLLGRADLDTLLAHREDLNNDLRTIIDKQTEPWGVQVHVV
EIKDVEIPESMQRAMAREAEAERERRAKVINARGELQASEELREAAETLSKSPASLQLRYLQTLLELGADQNSTVVFPLP
VDIITPFLRNPGLLQGVVDNVGRPG

Sequences:

>Translated_265_residues
MTTLVIALIGAGIVVLVVLGFWSLVVLREYERGVVFRMGHVRPLYGPGLRFLIPLLDKMIRVDQRLVTLTIPPQEVITRD
NVPARVNAVVMFQVTDPRKAILAVENYAVATSQIAQTTLRSLLGRADLDTLLAHREDLNNDLRTIIDKQTEPWGVQVHVV
EIKDVEIPESMQRAMAREAEAERERRAKVINARGELQASEELREAAETLSKSPASLQLRYLQTLLELGADQNSTVVFPLP
VDIITPFLRNPGLLQGVVDNVGRPG
>Mature_264_residues
TTLVIALIGAGIVVLVVLGFWSLVVLREYERGVVFRMGHVRPLYGPGLRFLIPLLDKMIRVDQRLVTLTIPPQEVITRDN
VPARVNAVVMFQVTDPRKAILAVENYAVATSQIAQTTLRSLLGRADLDTLLAHREDLNNDLRTIIDKQTEPWGVQVHVVE
IKDVEIPESMQRAMAREAEAERERRAKVINARGELQASEELREAAETLSKSPASLQLRYLQTLLELGADQNSTVVFPLPV
DIITPFLRNPGLLQGVVDNVGRPG

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=237, Percent_Identity=46.8354430379747, Blast_Score=198, Evalue=5e-51,
Organism=Homo sapiens, GI21686995, Length=235, Percent_Identity=45.9574468085106, Blast_Score=198, Evalue=5e-51,
Organism=Homo sapiens, GI38016911, Length=248, Percent_Identity=43.9516129032258, Blast_Score=197, Evalue=5e-51,
Organism=Homo sapiens, GI7657615, Length=236, Percent_Identity=38.9830508474576, Blast_Score=165, Evalue=3e-41,
Organism=Homo sapiens, GI7305503, Length=168, Percent_Identity=38.0952380952381, Blast_Score=118, Evalue=4e-27,
Organism=Homo sapiens, GI20149563, Length=150, Percent_Identity=30, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI38016907, Length=71, Percent_Identity=50.7042253521127, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1786697, Length=214, Percent_Identity=34.1121495327103, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17569493, Length=225, Percent_Identity=44.8888888888889, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71987612, Length=226, Percent_Identity=47.787610619469, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI25153583, Length=239, Percent_Identity=45.6066945606695, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI71987621, Length=229, Percent_Identity=48.0349344978166, Blast_Score=204, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI193209764, Length=225, Percent_Identity=44.8888888888889, Blast_Score=204, Evalue=5e-53,
Organism=Caenorhabditis elegans, GI17570459, Length=243, Percent_Identity=41.1522633744856, Blast_Score=198, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=250, Percent_Identity=41.2, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17569497, Length=251, Percent_Identity=39.8406374501992, Blast_Score=189, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=247, Percent_Identity=42.914979757085, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17570161, Length=247, Percent_Identity=42.914979757085, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI71989948, Length=232, Percent_Identity=40.0862068965517, Blast_Score=175, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI32566490, Length=206, Percent_Identity=47.0873786407767, Blast_Score=171, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI71989955, Length=182, Percent_Identity=41.2087912087912, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI32564147, Length=182, Percent_Identity=40.1098901098901, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=38.9830508474576, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17542664, Length=148, Percent_Identity=25.6756756756757, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45556022, Length=232, Percent_Identity=50, Blast_Score=217, Evalue=6e-57,
Organism=Drosophila melanogaster, GI18860517, Length=255, Percent_Identity=44.7058823529412, Blast_Score=210, Evalue=7e-55,
Organism=Drosophila melanogaster, GI62484448, Length=231, Percent_Identity=48.9177489177489, Blast_Score=196, Evalue=1e-50,
Organism=Drosophila melanogaster, GI281365664, Length=248, Percent_Identity=47.5806451612903, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI62484274, Length=232, Percent_Identity=48.7068965517241, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24657857, Length=248, Percent_Identity=47.5806451612903, Blast_Score=195, Evalue=2e-50,
Organism=Drosophila melanogaster, GI21356845, Length=246, Percent_Identity=39.8373983739837, Blast_Score=195, Evalue=3e-50,
Organism=Drosophila melanogaster, GI28573263, Length=243, Percent_Identity=41.5637860082305, Blast_Score=184, Evalue=4e-47,
Organism=Drosophila melanogaster, GI281361631, Length=247, Percent_Identity=38.0566801619433, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI281361633, Length=247, Percent_Identity=38.0566801619433, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI281361635, Length=178, Percent_Identity=39.3258426966292, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI45550506, Length=167, Percent_Identity=36.5269461077844, Blast_Score=118, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29506; Mature: 29375

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLVIALIGAGIVVLVVLGFWSLVVLREYERGVVFRMGHVRPLYGPGLRFLIPLLDKMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHH
RVDQRLVTLTIPPQEVITRDNVPARVNAVVMFQVTDPRKAILAVENYAVATSQIAQTTLR
HHCCEEEEEEECHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHH
SLLGRADLDTLLAHREDLNNDLRTIIDKQTEPWGVQVHVVEIKDVEIPESMQRAMAREAE
HHHCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
AERERRAKVINARGELQASEELREAAETLSKSPASLQLRYLQTLLELGADQNSTVVFPLP
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
VDIITPFLRNPGLLQGVVDNVGRPG
HHHHHHHHCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
TTLVIALIGAGIVVLVVLGFWSLVVLREYERGVVFRMGHVRPLYGPGLRFLIPLLDKMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHH
RVDQRLVTLTIPPQEVITRDNVPARVNAVVMFQVTDPRKAILAVENYAVATSQIAQTTLR
HHCCEEEEEEECHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHH
SLLGRADLDTLLAHREDLNNDLRTIIDKQTEPWGVQVHVVEIKDVEIPESMQRAMAREAE
HHHCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
AERERRAKVINARGELQASEELREAAETLSKSPASLQLRYLQTLLELGADQNSTVVFPLP
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
VDIITPFLRNPGLLQGVVDNVGRPG
HHHHHHHHCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]