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The map label for this gene is smpB

Identifier: 41409268

GI number: 41409268

Start: 3522068

End: 3522577

Strand: Reverse

Name: smpB

Synonym: MAP3170c

Alternate gene names: 41409268

Gene position: 3522577-3522068 (Counterclockwise)

Preceding gene: 41409269

Following gene: 41409267

Centisome position: 72.93

GC content: 59.02

Gene sequence:

>510_bases
GTGGCCAAGGGTTCCGGCCGGGCCAAAGCGGCGGGCGGCAAAGGTGGCAGCAAACAGATCATTGCCACCAATCGCAAAGC
GCGGCACAACTATTCGATCATCGAAACGTACGAGGCCGGGGTGGCGTTGCAAGGAACCGAGGTCAAAAGCCTGCGGGAGG
GCCAAGCGTCGTTAGCTGACGCGTTCGCAACGATCGACGACGGTGAAGTCTGGTTGCGCAACTTGTACATCCCGGAGTAT
CAACACGGTAGCTGGACCAATCACGACCCACGCCGGAACCGAAAGTTGTTGTTACATAGGCAACAAATCGACAGACTGGT
CGGCAAGATCCGGGATGGTAACCTCGCCTTGATGCCGCTGTCGCTGTACTTCTCCGAGGGCAAAGTGAAGGTAGAGCTCG
CTCTCGCGCGCGGCAAGAAGGCTTACGACAAACGCCAGGACCTGGCCCAGCGCGACGCACAGCGCGAAGTCGTTCGTCAA
CTGGGACGCCGAACAAAGGGGATGATCTGA

Upstream 100 bases:

>100_bases
CCGACATCCTCTACATCTCGCCGTGGCTGTTCGTGCTCGGCGTGTCGATCGCCGGCCTGACCGCCTACGCCACCCTGCGC
CTCTACATCCGGCGGTAGCT

Downstream 100 bases:

>100_bases
TCGGGGCCGCTTACGCCCAGCTGTCGGCCGTCACGTACGGCGTCAGCGATTTCGTGGGCGGCGTCGCAGCTCGGCGGGTA
GCCGCGCTGCGCGTGATGCT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MAKGSGRAKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIPEY
QHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSEGKVKVELALARGKKAYDKRQDLAQRDAQREVVRQ
LGRRTKGMI

Sequences:

>Translated_169_residues
MAKGSGRAKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIPEY
QHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSEGKVKVELALARGKKAYDKRQDLAQRDAQREVVRQ
LGRRTKGMI
>Mature_168_residues
AKGSGRAKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIPEYQ
HGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSEGKVKVELALARGKKAYDKRQDLAQRDAQREVVRQL
GRRTKGMI

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=140, Percent_Identity=42.1428571428571, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_MYCPA (Q73V46)

Other databases:

- EMBL:   AE016958
- RefSeq:   NP_962104.1
- ProteinModelPortal:   Q73V46
- SMR:   Q73V46
- EnsemblBacteria:   EBMYCT00000038344
- GeneID:   2721580
- GenomeReviews:   AE016958_GR
- KEGG:   mpa:MAP3170c
- NMPDR:   fig|262316.1.peg.3170
- GeneTree:   EBGT00050000017126
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18955; Mature: 18824

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGSGRAKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLAD
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHH
AFATIDDGEVWLRNLYIPEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPL
HHHCCCCCCEEHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
SLYFSEGKVKVELALARGKKAYDKRQDLAQRDAQREVVRQLGRRTKGMI
EEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKGSGRAKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLAD
CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHH
AFATIDDGEVWLRNLYIPEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPL
HHHCCCCCCEEHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
SLYFSEGKVKVELALARGKKAYDKRQDLAQRDAQREVVRQLGRRTKGMI
EEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA