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The map label for this gene is ydiU [C]

Identifier: 41409252

GI number: 41409252

Start: 3507344

End: 3508819

Strand: Direct

Name: ydiU [C]

Synonym: MAP3154

Alternate gene names: 41409252

Gene position: 3507344-3508819 (Clockwise)

Preceding gene: 41409251

Following gene: 41409255

Centisome position: 72.62

GC content: 70.46

Gene sequence:

>1476_bases
ATGAGCGTCGCACCGGAGACCACCGTCGCCCTGCAGGACCGGTTTTTCCGCGAATTACCGGAACTGGCGGTCCGCTGGCA
GGCCGAGACCTTCCCCGAGCTGCGGCTGCTGGTGCTCAACGAACCCCTGGCCACCCAGCTTGGCCTCGACACCGGCTGGT
TGCGCGGTCCCGACGGGCTGCGGTTCCTGACCGGAAACCTGGTGCCCACCGGCGCCGCCCCGGTCGCCCAGGCCTACTCC
GGGCATCAGTTCGGCGGCTTCGTCCCCCGGCTCGGCGACGGGCGCGCCCTGCTGCTCGGTGAGCTGGTCGACAACAAGGG
TCGGCTGCGTGACATCCACCTCAAGGGATCCGGTGCGACGCCGTTCGCCCGGGGTGGCGACGGGCTGGCCGCGGTGGGCC
CGATGCTGCGCGAATACGTCGTCAGCGAGGCGATGCACGCGCTGGGCGTGCCGACCACCCGATCGCTGGCCGTGGTCGGC
ACCGGGCGCCCGGTGTACCGGGAGGCCACGCTGCCGGGCGCGGTTCTGGCCCGAGTGGCCAGCAGTCACCTGCGGGTGGG
CAGCTTCCAATACGCCGCCGCGACCGGCAACAGGGACCTGCTGCGCCGGCTGGCCGACCACGCGATCGCCCGCCACCATC
CCGGCGCCGCGGACGCCGAGCAGCCCTACCTGGCCCTGTTCGAAGCCGTCGTCGCGGCCCAGGCGTCGCTGATCGCCCAG
TGGATGCTGATCGGGTTCGTGCACGGCGTGATGAACACCGACAACATGACCATCTCCGGGGAAACGATCGACTACGGGCC
GTGCGCGTTCATGGAGGCCTACGACCCCGACACGGTGTTCAGCTCCATCGATTTCTGGGGCCGCTACGCCTACGGCAACC
AGCCGGTCATCGCCGGATGGAACCTCGCCCGCTTCGCCGAGACCCTGCTGCCGCTGTTCTCGGAGAACACCGAGGAGGCG
ATCGCGCTCGCCGAGCGGTCGTTCGGCGTCTTCCAGACCCGTTATGACGCGGTGTGGGCCACCGGGATGCGGGCCAAACT
CGGCCTGCCCGCGCAGGTCGACGCCGAATTCGCGGCGGCGTTGATCGACGAACTGCTGGCCCTGCTCAAGGCCAACCACG
TCGACTACACGTCCTTCTTCCGCCAGCTCGGCCGGGCGGCGCGCGGCGACGACAGGTCGGCCGCCGAACCGGCCCGCGAA
ATGTTCATGGACCTGCCCGGCTTCGACGCGTGGTTGGCGCGCTGGCGGGCGCTGGGTCCCGACGCCGACGCGATGGATCG
CGTCAACCCGATCTACATTCCGCGCAACCATCTGGTCGAGGAGGCGCTCGCCGCGGCGACCGACGGCGACCTCGACCCGC
TCGACCAACTGCTCGCCGCGGTGACGGCGCCCTACACCGAACGCCCGGGCTTCGAGCGCTACGCCAGCCCCGCCCCCGAG
GACTTCGGGAAGTACCAAACCTTCTGCGGCACTTGA

Upstream 100 bases:

>100_bases
GGTCGGCCCGTTCGCCTCGATGCTCGATCGCGCCCGCGACCTGATCGGCCGGGCCATCGGTTAGCCCGGGGCCGGCCCGA
GTTTCCGTACCCTCGGTGAG

Downstream 100 bases:

>100_bases
GGTTACGTTAGCCGGTTGCTTCGGCCACGACCCGGGCTGGCCGGCGCTTGGCCGGGCGTACCGCGCCCCACAACCCGGTG
GCGATCCCGACGGCGGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MSVAPETTVALQDRFFRELPELAVRWQAETFPELRLLVLNEPLATQLGLDTGWLRGPDGLRFLTGNLVPTGAAPVAQAYS
GHQFGGFVPRLGDGRALLLGELVDNKGRLRDIHLKGSGATPFARGGDGLAAVGPMLREYVVSEAMHALGVPTTRSLAVVG
TGRPVYREATLPGAVLARVASSHLRVGSFQYAAATGNRDLLRRLADHAIARHHPGAADAEQPYLALFEAVVAAQASLIAQ
WMLIGFVHGVMNTDNMTISGETIDYGPCAFMEAYDPDTVFSSIDFWGRYAYGNQPVIAGWNLARFAETLLPLFSENTEEA
IALAERSFGVFQTRYDAVWATGMRAKLGLPAQVDAEFAAALIDELLALLKANHVDYTSFFRQLGRAARGDDRSAAEPARE
MFMDLPGFDAWLARWRALGPDADAMDRVNPIYIPRNHLVEEALAAATDGDLDPLDQLLAAVTAPYTERPGFERYASPAPE
DFGKYQTFCGT

Sequences:

>Translated_491_residues
MSVAPETTVALQDRFFRELPELAVRWQAETFPELRLLVLNEPLATQLGLDTGWLRGPDGLRFLTGNLVPTGAAPVAQAYS
GHQFGGFVPRLGDGRALLLGELVDNKGRLRDIHLKGSGATPFARGGDGLAAVGPMLREYVVSEAMHALGVPTTRSLAVVG
TGRPVYREATLPGAVLARVASSHLRVGSFQYAAATGNRDLLRRLADHAIARHHPGAADAEQPYLALFEAVVAAQASLIAQ
WMLIGFVHGVMNTDNMTISGETIDYGPCAFMEAYDPDTVFSSIDFWGRYAYGNQPVIAGWNLARFAETLLPLFSENTEEA
IALAERSFGVFQTRYDAVWATGMRAKLGLPAQVDAEFAAALIDELLALLKANHVDYTSFFRQLGRAARGDDRSAAEPARE
MFMDLPGFDAWLARWRALGPDADAMDRVNPIYIPRNHLVEEALAAATDGDLDPLDQLLAAVTAPYTERPGFERYASPAPE
DFGKYQTFCGT
>Mature_490_residues
SVAPETTVALQDRFFRELPELAVRWQAETFPELRLLVLNEPLATQLGLDTGWLRGPDGLRFLTGNLVPTGAAPVAQAYSG
HQFGGFVPRLGDGRALLLGELVDNKGRLRDIHLKGSGATPFARGGDGLAAVGPMLREYVVSEAMHALGVPTTRSLAVVGT
GRPVYREATLPGAVLARVASSHLRVGSFQYAAATGNRDLLRRLADHAIARHHPGAADAEQPYLALFEAVVAAQASLIAQW
MLIGFVHGVMNTDNMTISGETIDYGPCAFMEAYDPDTVFSSIDFWGRYAYGNQPVIAGWNLARFAETLLPLFSENTEEAI
ALAERSFGVFQTRYDAVWATGMRAKLGLPAQVDAEFAAALIDELLALLKANHVDYTSFFRQLGRAARGDDRSAAEPAREM
FMDLPGFDAWLARWRALGPDADAMDRVNPIYIPRNHLVEEALAAATDGDLDPLDQLLAAVTAPYTERPGFERYASPAPED
FGKYQTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=386, Percent_Identity=39.119170984456, Blast_Score=234, Evalue=1e-61,
Organism=Escherichia coli, GI1787999, Length=485, Percent_Identity=40, Blast_Score=320, Evalue=1e-88,
Organism=Saccharomyces cerevisiae, GI6325034, Length=429, Percent_Identity=29.1375291375291, Blast_Score=176, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3154_MYCPA (Q73V62)

Other databases:

- EMBL:   AE016958
- RefSeq:   NP_962088.1
- EnsemblBacteria:   EBMYCT00000036600
- GeneID:   2719264
- GenomeReviews:   AE016958_GR
- KEGG:   mpa:MAP3154
- NMPDR:   fig|262316.1.peg.3154
- GeneTree:   EBGT00050000017992
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- ProtClustDB:   CLSK924862
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 53325; Mature: 53194

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00539 PYROKININ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAPETTVALQDRFFRELPELAVRWQAETFPELRLLVLNEPLATQLGLDTGWLRGPDGL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCC
RFLTGNLVPTGAAPVAQAYSGHQFGGFVPRLGDGRALLLGELVDNKGRLRDIHLKGSGAT
EEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCC
PFARGGDGLAAVGPMLREYVVSEAMHALGVPTTRSLAVVGTGRPVYREATLPGAVLARVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCHHHHHHHH
SSHLRVGSFQYAAATGNRDLLRRLADHAIARHHPGAADAEQPYLALFEAVVAAQASLIAQ
HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
WMLIGFVHGVMNTDNMTISGETIDYGPCAFMEAYDPDTVFSSIDFWGRYAYGNQPVIAGW
HHHHHHHHHHCCCCCEEEECCCCCCCCCHHCCCCCCHHHHHHHHHHEEECCCCCCEEECC
NLARFAETLLPLFSENTEEAIALAERSFGVFQTRYDAVWATGMRAKLGLPAQVDAEFAAA
CHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHH
LIDELLALLKANHVDYTSFFRQLGRAARGDDRSAAEPAREMFMDLPGFDAWLARWRALGP
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCC
DADAMDRVNPIYIPRNHLVEEALAAATDGDLDPLDQLLAAVTAPYTERPGFERYASPAPE
CCHHHHCCCCEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCH
DFGKYQTFCGT
HHHCCHHHCCC
>Mature Secondary Structure 
SVAPETTVALQDRFFRELPELAVRWQAETFPELRLLVLNEPLATQLGLDTGWLRGPDGL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCC
RFLTGNLVPTGAAPVAQAYSGHQFGGFVPRLGDGRALLLGELVDNKGRLRDIHLKGSGAT
EEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCCCC
PFARGGDGLAAVGPMLREYVVSEAMHALGVPTTRSLAVVGTGRPVYREATLPGAVLARVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCHHHHHHHH
SSHLRVGSFQYAAATGNRDLLRRLADHAIARHHPGAADAEQPYLALFEAVVAAQASLIAQ
HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
WMLIGFVHGVMNTDNMTISGETIDYGPCAFMEAYDPDTVFSSIDFWGRYAYGNQPVIAGW
HHHHHHHHHHCCCCCEEEECCCCCCCCCHHCCCCCCHHHHHHHHHHEEECCCCCCEEECC
NLARFAETLLPLFSENTEEAIALAERSFGVFQTRYDAVWATGMRAKLGLPAQVDAEFAAA
CHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHH
LIDELLALLKANHVDYTSFFRQLGRAARGDDRSAAEPAREMFMDLPGFDAWLARWRALGP
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCC
DADAMDRVNPIYIPRNHLVEEALAAATDGDLDPLDQLLAAVTAPYTERPGFERYASPAPE
CCHHHHCCCCEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCH
DFGKYQTFCGT
HHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA