Definition Mycobacterium avium subsp. paratuberculosis K-10, complete genome.
Accession NC_002944
Length 4,829,781

Click here to switch to the map view.

The map label for this gene is 41409211

Identifier: 41409211

GI number: 41409211

Start: 3460764

End: 3461966

Strand: Reverse

Name: 41409211

Synonym: MAP3113c

Alternate gene names: NA

Gene position: 3461966-3460764 (Counterclockwise)

Preceding gene: 41409213

Following gene: 41409210

Centisome position: 71.68

GC content: 72.4

Gene sequence:

>1203_bases
GTGTGCATGGCGCATTTCGAGAAGGACGCGATCCTGTCCGGCATCGGGATCTCCCGGATCGGACGCCGCACCGGCATACC
GGGCCTGGAGCTGACCATGGAGGCGGTCCGGGCCGCCGTCGCCGACGCCGGCCTGGCCCCGACCGACATCGACGGCATCG
CCACCCTGGGCGACACGCTCGCCGCCGACGTCAACGCCCAGCTGGGCATCGACGCCGCCGACTGCGGCTCCGGGTTCGGC
ACCGGCGGGTTGCTCTCCCCGGTGATGTCGGCCTGCCGCGCCGTGGCCGAACGCCGCGCCCGCCACGTGGTCGTCTACCG
GACCATCCAGATGCTCGGCGGCACCGTCCCGGTCAAGCAGGAACCCAACGCGGCGGCCCCGCCGCTGGCCCGGATGTTCG
AGACCCCCGAGGGCGAGCCCAAGCCCGCCGTCGGTGCGATGGACGACGTCAACGATCTGGTCGCCGCGCACGACTACTCC
GCCGCCAACTGGCTGGCGCTGAACTGCCGCCGCCACATGCAGCTGTACGGCACCCGCAAGGAACAGCTGGGCTGGGTGGC
CCTCAACGGCAGGCGCAACGCCGCACTGAATCCCCTTGCGGTGTACCGCGATCCGATGACCATGGCCGACTACCTGGGTG
CTCGGCTGGTGTCCACCCCGCTGGGGCTGCTGGACTGCGACGTCCCGATCGACGGCTCGATCGCCGTGGTGGTCTCGCAT
CTCGAGTACGCGCCCGACTGCCCGCACCGCGCGGTGCAGGTGGAGGCGATCGGCGGCTCCGACGGCGCCGGCGGCTGGTT
CCACCGCGCCGACTACCCGAAGATGGCGATGTCGGACGCGGCGGCGCAGATGTGGTCGCGCACCGACCTGACGGCCGCCG
ACCTCGACGTCGCCCAGTTGTACGACGGGTTCACCTTTCTCACCCTGGCCTGGCTGGAAGCCCTCGGGGTCTGCGGCGAC
GGCGAAGCCGGACCGTTCGTGGAGGGCGGGGCGCGCATCGCCCGCGACGGCGAGCTGCCGTTGAACACCTACGGCGGTCA
ACTCTCCGCGGGGCGCATGCACGGCTATTGGGCGCTGCACGAGGGGTGCCTGCAGTTGCGCGGCGACGCGGGGGAGCGGC
AGGTGGCGCGCCGCCCGCAGGTGGGCGTGGTGTCCGTCGGCGGCGGGCCCGTCGCGGGATGCATGCTGCTCACCTGCCGG
TAG

Upstream 100 bases:

>100_bases
GCGCAGCCGTCGCAGTACTCGATGCGCAGCGGCCCGTCCGACACGACGAATACAGTACACTCAATTGGTTCGACGCGGCG
ACGGTGTGGTCTGACGGGCG

Downstream 100 bases:

>100_bases
GGCGATCGATGAACGCGGAGCCCAGAACCGGTCCGGCGAAAACGCTCGCGTCGGCCCTCGCCCGGGACATCGAAGCCGAG
ATCGTCCGGCGCGGGTGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTLAADVNAQLGIDAADCGSGFG
TGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQEPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYS
AANWLALNCRRHMQLYGTRKEQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH
LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQLYDGFTFLTLAWLEALGVCGD
GEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALHEGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR

Sequences:

>Translated_400_residues
MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTLAADVNAQLGIDAADCGSGFG
TGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQEPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYS
AANWLALNCRRHMQLYGTRKEQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH
LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQLYDGFTFLTLAWLEALGVCGD
GEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALHEGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR
>Mature_400_residues
MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTLAADVNAQLGIDAADCGSGFG
TGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQEPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYS
AANWLALNCRRHMQLYGTRKEQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH
LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQLYDGFTFLTLAWLEALGVCGD
GEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALHEGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI302344767, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI19923233, Length=215, Percent_Identity=28.3720930232558, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI302344760, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI302344762, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI55956775, Length=189, Percent_Identity=25.3968253968254, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17537653, Length=216, Percent_Identity=26.8518518518519, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19921506, Length=384, Percent_Identity=26.0416666666667, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24585051, Length=217, Percent_Identity=30.8755760368664, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002155
- InterPro:   IPR016039
- InterPro:   IPR016038
- InterPro:   IPR020617
- InterPro:   IPR020616 [H]

Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]

EC number: NA

Molecular weight: Translated: 42095; Mature: 42095

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTL
CCCCCCCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
AADVNAQLGIDAADCGSGFGTGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQ
HHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHCCCCCCCC
EPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYSAANWLALNCRRHMQLYGTRK
CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCHH
EQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH
HHCCEEEECCCCCCCCCCHHEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEH
LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQL
HHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCHHHHH
YDGFTFLTLAWLEALGVCGDGEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALH
HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHH
EGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR
HHHHHHCCCCCHHHHHCCCCCCEEEECCCCEEEEEEEECC
>Mature Secondary Structure
MCMAHFEKDAILSGIGISRIGRRTGIPGLELTMEAVRAAVADAGLAPTDIDGIATLGDTL
CCCCCCCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
AADVNAQLGIDAADCGSGFGTGGLLSPVMSACRAVAERRARHVVVYRTIQMLGGTVPVKQ
HHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHCCCCCCCC
EPNAAAPPLARMFETPEGEPKPAVGAMDDVNDLVAAHDYSAANWLALNCRRHMQLYGTRK
CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCHH
EQLGWVALNGRRNAALNPLAVYRDPMTMADYLGARLVSTPLGLLDCDVPIDGSIAVVVSH
HHCCEEEECCCCCCCCCCHHEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEH
LEYAPDCPHRAVQVEAIGGSDGAGGWFHRADYPKMAMSDAAAQMWSRTDLTAADLDVAQL
HHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCHHHHH
YDGFTFLTLAWLEALGVCGDGEAGPFVEGGARIARDGELPLNTYGGQLSAGRMHGYWALH
HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHH
EGCLQLRGDAGERQVARRPQVGVVSVGGGPVAGCMLLTCR
HHHHHHCCCCCHHHHHCCCCCCEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]