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The map label for this gene is fni [H]

Identifier: 41409177

GI number: 41409177

Start: 3424200

End: 3425234

Strand: Reverse

Name: fni [H]

Synonym: MAP3079c

Alternate gene names: 41409177

Gene position: 3425234-3424200 (Counterclockwise)

Preceding gene: 41409180

Following gene: 41409176

Centisome position: 70.92

GC content: 67.05

Gene sequence:

>1035_bases
ATGGACGCGATGACACACCGGAAACGACGGCACATCGACGTGTGTCTGAGCGACCCGGTGGAATTCGACGGCGTCACAAC
CGGGTTGGACCGCTACCGATTGCCCTACCACGCACTGACACAGACCAGTCTGGGCGACATCAACGTGTCCACCTCGTTCT
TCGGGGCGAACCTGCGGGCGCCGATCCTCATCGGCGCCATGACCGGGGGCGCCGAGATGTCGAAGACGATCAACCGGAAT
CTGGCCGCAGCCGCTCAGCAGCTGGGAATCGGCATGATGCTGGGGTCGCAACGGATCATGCTCGACACCGCGCTGGGCGA
ACGCGCCGCGGACAGCTTCGCGGTTCGCGATGTGGCCCCGGATGTCTTGCTGTTCGGCAACATCGGTTTGTCGCAGCTGG
CGAAGACGGCGGTTCCACATCTGGTGAAGGCGCTCGATCGGGTGGGTGCGGACGCCTTGGCCGTGCACACCAATCCGTTG
CAGGAGGCGATGCAGCACAACGGGGACACCGACTTCTCCGGCTCGCTGAGCAGGCTGCGCGAAGCCGCCGCCGCGCTCGA
TTATCCGGTGCTGCTCAAAGAGGTCGGCCACGGCATCGGCGGTGCGGCCGCCGCGGAACTTGTTGGGGGAGAAGGGCAAC
CGCCGGTGGCCGGTATTGATGTGGCGGGTGCCGGAGGCACTTCCTGGTCGCGCGTCGAACAGTTCGTTCGGTACGGCGAG
CTACGCTATCCGGACCTGGCGGACTGGGGTGTGCCCACCGCGCGCGCGATCGTCGAGGTGCGGCGGCTGTTGCCGGGTAT
CCCCTTGGTGGCCTCCGGTGGTATTCGGACGGGCATGGACGCGGCCAAGGCGATCGCGTTGGGTGCCGACGTGGTGGCGG
TAGCGCGGCCACTGTTGCCGGCGGCGATCGAATCCTCTGCGGCCGTGGTCGATTGGCTGGAGCCGTTCATCGACGGGTTG
CGGGTGTGTCTGCACGGCTGCGGTGTCGCCGACCTGGCGGGCTTGCGTGCCGTCGAGCCGATCCGCCTCGCCTAG

Upstream 100 bases:

>100_bases
TTAAACATTAATCAACTGAAATGACGCGTCGTACGCCGATGCGTCGGCGGCACCCGAAAAGGGGCACTATGGACATTATG
GACACCCGGCGGGGGCCCCG

Downstream 100 bases:

>100_bases
GTGTACTGACCACGGACGTTGGTGACGGCGTGGTGAGGTGACATGACGAGAACCTCCGAGTGAAGTGCGAGCTGCTTAGG
AAACGCACTCACCTCGGAGG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MDAMTHRKRRHIDVCLSDPVEFDGVTTGLDRYRLPYHALTQTSLGDINVSTSFFGANLRAPILIGAMTGGAEMSKTINRN
LAAAAQQLGIGMMLGSQRIMLDTALGERAADSFAVRDVAPDVLLFGNIGLSQLAKTAVPHLVKALDRVGADALAVHTNPL
QEAMQHNGDTDFSGSLSRLREAAAALDYPVLLKEVGHGIGGAAAAELVGGEGQPPVAGIDVAGAGGTSWSRVEQFVRYGE
LRYPDLADWGVPTARAIVEVRRLLPGIPLVASGGIRTGMDAAKAIALGADVVAVARPLLPAAIESSAAVVDWLEPFIDGL
RVCLHGCGVADLAGLRAVEPIRLA

Sequences:

>Translated_344_residues
MDAMTHRKRRHIDVCLSDPVEFDGVTTGLDRYRLPYHALTQTSLGDINVSTSFFGANLRAPILIGAMTGGAEMSKTINRN
LAAAAQQLGIGMMLGSQRIMLDTALGERAADSFAVRDVAPDVLLFGNIGLSQLAKTAVPHLVKALDRVGADALAVHTNPL
QEAMQHNGDTDFSGSLSRLREAAAALDYPVLLKEVGHGIGGAAAAELVGGEGQPPVAGIDVAGAGGTSWSRVEQFVRYGE
LRYPDLADWGVPTARAIVEVRRLLPGIPLVASGGIRTGMDAAKAIALGADVVAVARPLLPAAIESSAAVVDWLEPFIDGL
RVCLHGCGVADLAGLRAVEPIRLA
>Mature_344_residues
MDAMTHRKRRHIDVCLSDPVEFDGVTTGLDRYRLPYHALTQTSLGDINVSTSFFGANLRAPILIGAMTGGAEMSKTINRN
LAAAAQQLGIGMMLGSQRIMLDTALGERAADSFAVRDVAPDVLLFGNIGLSQLAKTAVPHLVKALDRVGADALAVHTNPL
QEAMQHNGDTDFSGSLSRLREAAAALDYPVLLKEVGHGIGGAAAAELVGGEGQPPVAGIDVAGAGGTSWSRVEQFVRYGE
LRYPDLADWGVPTARAIVEVRRLLPGIPLVASGGIRTGMDAAKAIALGADVVAVARPLLPAAIESSAAVVDWLEPFIDGL
RVCLHGCGVADLAGLRAVEPIRLA

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 35931; Mature: 35931

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMTHRKRRHIDVCLSDPVEFDGVTTGLDRYRLPYHALTQTSLGDINVSTSFFGANLRA
CCCHHHHHHHCEEEEECCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCHHHCCCCCCC
PILIGAMTGGAEMSKTINRNLAAAAQQLGIGMMLGSQRIMLDTALGERAADSFAVRDVAP
CEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHEECCCEEEEEHHHCHHHHHHHHHHHCCC
DVLLFGNIGLSQLAKTAVPHLVKALDRVGADALAVHTNPLQEAMQHNGDTDFSGSLSRLR
CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHH
EAAAALDYPVLLKEVGHGIGGAAAAELVGGEGQPPVAGIDVAGAGGTSWSRVEQFVRYGE
HHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
LRYPDLADWGVPTARAIVEVRRLLPGIPLVASGGIRTGMDAAKAIALGADVVAVARPLLP
CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHH
AAIESSAAVVDWLEPFIDGLRVCLHGCGVADLAGLRAVEPIRLA
HHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDAMTHRKRRHIDVCLSDPVEFDGVTTGLDRYRLPYHALTQTSLGDINVSTSFFGANLRA
CCCHHHHHHHCEEEEECCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCHHHCCCCCCC
PILIGAMTGGAEMSKTINRNLAAAAQQLGIGMMLGSQRIMLDTALGERAADSFAVRDVAP
CEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHEECCCEEEEEHHHCHHHHHHHHHHHCCC
DVLLFGNIGLSQLAKTAVPHLVKALDRVGADALAVHTNPLQEAMQHNGDTDFSGSLSRLR
CEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHH
EAAAALDYPVLLKEVGHGIGGAAAAELVGGEGQPPVAGIDVAGAGGTSWSRVEQFVRYGE
HHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
LRYPDLADWGVPTARAIVEVRRLLPGIPLVASGGIRTGMDAAKAIALGADVVAVARPLLP
CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCHHHHHHHHHHHH
AAIESSAAVVDWLEPFIDGLRVCLHGCGVADLAGLRAVEPIRLA
HHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA