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The map label for this gene is crtB [H]

Identifier: 41409169

GI number: 41409169

Start: 3417499

End: 3418230

Strand: Direct

Name: crtB [H]

Synonym: MAP3071

Alternate gene names: 41409169

Gene position: 3417499-3418230 (Clockwise)

Preceding gene: 41409168

Following gene: 41409170

Centisome position: 70.76

GC content: 70.08

Gene sequence:

>732_bases
GTGCGCGCCCGGCGGCTGCAACGGCTGTCGGAGCGTCTCTTCTCCGGCGGTGCGCACGCCGACGATCCGTTGGTGGCCGC
GGTCACCCACACCGCGCGGCGCTACCGGATCAGCTCCCAACTGTTCGCGGACTTTTTGGCCTCGATGCGCATGGACCTGA
CCGTCACCGACTATCCGGACCGGGAAGCGCTCAACCGCTACATGCGCGGATCCGCGGAAGCCATTGGGCTGCAAGTGCTC
CCGATACTGGGTACCGTTACGCCGGTGGACGAGGCCGCACCCTATGCGGCGGCCCTGGGCCGGGCGTTCCAGCTCACCAA
CTTCCTGCGCGACGTCGACGAAGATCTGGCGCGCGGCCGGGTGTACCTGCCGGCGGACGAACTTGCCGCCGACGGCGTCG
ACCGGGAGCTGCTGATGTGGTGCCACGAGCACCGCCGCACCGATCCGCGGGTGCGCCGGGCGCTGATCGCACAGCACCAC
ATCGCCCGTCAGACATACCGATTCGCCACCGCCGGGATCGCGGTCCTGCAGCACCGCTCACGGCCGTGCGTGGCGGCCGC
GGCGGCGTTGTATTCGGAGATCCTGGACTGCATCGAGAAAAGCGATTTCGCGGTCTTCGACCACCGGGCCACCGTGGGCA
CGGCGCGACGGCTGCGGGTCGGCGCGGTGGGGCTGATCCGCTCGTGGCGGGCGCGCAACAGCGGTCGGGGTATTCGGTCG
GGGGCCGCATGA

Upstream 100 bases:

>100_bases
CTCGCACCCGACCAGCGCCCGCCCGTGCACGCACTGTACGGCTTCGCCCGCTACGCCGACGACATCCTCGACGACCTCGA
CCCGCGGGTGGGCCCCCGCG

Downstream 100 bases:

>100_bases
GCGATCGGTGGCAATACCTGGTGGTGCTCGCCGCCTGTCTGGTGGTCACCGCGCCGCTGGAGATCGCGGGTGCGGGCGTC
TACCGGAGGTGGCGACGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRARRLQRLSERLFSGGAHADDPLVAAVTHTARRYRISSQLFADFLASMRMDLTVTDYPDREALNRYMRGSAEAIGLQVL
PILGTVTPVDEAAPYAAALGRAFQLTNFLRDVDEDLARGRVYLPADELAADGVDRELLMWCHEHRRTDPRVRRALIAQHH
IARQTYRFATAGIAVLQHRSRPCVAAAAALYSEILDCIEKSDFAVFDHRATVGTARRLRVGAVGLIRSWRARNSGRGIRS
GAA

Sequences:

>Translated_243_residues
MRARRLQRLSERLFSGGAHADDPLVAAVTHTARRYRISSQLFADFLASMRMDLTVTDYPDREALNRYMRGSAEAIGLQVL
PILGTVTPVDEAAPYAAALGRAFQLTNFLRDVDEDLARGRVYLPADELAADGVDRELLMWCHEHRRTDPRVRRALIAQHH
IARQTYRFATAGIAVLQHRSRPCVAAAAALYSEILDCIEKSDFAVFDHRATVGTARRLRVGAVGLIRSWRARNSGRGIRS
GAA
>Mature_243_residues
MRARRLQRLSERLFSGGAHADDPLVAAVTHTARRYRISSQLFADFLASMRMDLTVTDYPDREALNRYMRGSAEAIGLQVL
PILGTVTPVDEAAPYAAALGRAFQLTNFLRDVDEDLARGRVYLPADELAADGVDRELLMWCHEHRRTDPRVRRALIAQHH
IARQTYRFATAGIAVLQHRSRPCVAAAAALYSEILDCIEKSDFAVFDHRATVGTARRLRVGAVGLIRSWRARNSGRGIRS
GAA

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 27064; Mature: 27064

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARRLQRLSERLFSGGAHADDPLVAAVTHTARRYRISSQLFADFLASMRMDLTVTDYPD
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
REALNRYMRGSAEAIGLQVLPILGTVTPVDEAAPYAAALGRAFQLTNFLRDVDEDLARGR
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VYLPADELAADGVDRELLMWCHEHRRTDPRVRRALIAQHHIARQTYRFATAGIAVLQHRS
EECCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RPCVAAAAALYSEILDCIEKSDFAVFDHRATVGTARRLRVGAVGLIRSWRARNSGRGIRS
CCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GAA
CCC
>Mature Secondary Structure
MRARRLQRLSERLFSGGAHADDPLVAAVTHTARRYRISSQLFADFLASMRMDLTVTDYPD
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
REALNRYMRGSAEAIGLQVLPILGTVTPVDEAAPYAAALGRAFQLTNFLRDVDEDLARGR
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VYLPADELAADGVDRELLMWCHEHRRTDPRVRRALIAQHHIARQTYRFATAGIAVLQHRS
EECCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RPCVAAAAALYSEILDCIEKSDFAVFDHRATVGTARRLRVGAVGLIRSWRARNSGRGIRS
CCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GAA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8917308 [H]