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The map label for this gene is 41409078

Identifier: 41409078

GI number: 41409078

Start: 3312075

End: 3312668

Strand: Reverse

Name: 41409078

Synonym: MAP2980c

Alternate gene names: NA

Gene position: 3312668-3312075 (Counterclockwise)

Preceding gene: 41409079

Following gene: 41409076

Centisome position: 68.59

GC content: 68.86

Gene sequence:

>594_bases
ATGGCCAGAACCCAGCAACAGCGCCGCGAGGAAACCGTCGCGCGGCTGCTGGACGCGTCCATCGCCACCATCATCGAGGT
CGGCTACGCCCGCGCCTCGGCGGCGGTGATCACCAAGCGGGCCGGGGTGTCGGTGGGTGCGCTGTTCCGGCACTTCGACA
CCATGGGCGACTTCATGGCGGCCACCGCCTCGGAGGTGTTGCGCCGTCAACTGGAGTCCTTCACCAAGCGGGTCGCCGAC
ATACCCGCCGACCAGCCGGTGCTGGAAGTGGTGCTGGGCATCCTGCGCGACCTCACCAGCGGCCCGGTCAACGCCGTGAT
CTACGAACTGACGGTTGCGGCGCGCACCGACGAAAAGCTCAGGGAGACTTTGCAACACGAGCTCGCGCAGTACGCCGCGA
AGATCGACGAGGTGTCTCGCGCGCTGCCCGGCGTCGAGGGTTTCCCGGCCGACACCTTCCCGGTGCTGGTGGCGCTGATG
CGCAACGTGTTCGACGGCGCCGCGGTGGTGGAAGGTGTGCTGCCGCAACCGGAAATCGCGGCGCGCCGGATCCCGGTGTT
GACCGCGCTGCTGAACGCCGCGCTGCCGCCGTGA

Upstream 100 bases:

>100_bases
TTCCGGGACGGCTACGGGCACACCGTGAAATCGGGCCGCTACCTGCGGGCCGGCCAGCGGGTCCGGGCCAGGGTCGGCGC
CCCGAGGGTGACCGCCTGAG

Downstream 100 bases:

>100_bases
GTCTGGCGAGCAGACGCAAAAGCACGCGACACGCCGGGGAATCGGGCGCTTTTGTGTCTGCTCGCGGCGGGGGCGGCGTG
GCGCGGGGTGGCGAGCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMAATASEVLRRQLESFTKRVAD
IPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKLRETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALM
RNVFDGAAVVEGVLPQPEIAARRIPVLTALLNAALPP

Sequences:

>Translated_197_residues
MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMAATASEVLRRQLESFTKRVAD
IPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKLRETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALM
RNVFDGAAVVEGVLPQPEIAARRIPVLTALLNAALPP
>Mature_196_residues
ARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMAATASEVLRRQLESFTKRVADI
PADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKLRETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMR
NVFDGAAVVEGVLPQPEIAARRIPVLTALLNAALPP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21286; Mature: 21155

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ATASEVLRRQLESFTKRVADIPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ARRIPVLTALLNAALPP
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARTQQQRREETVARLLDASIATIIEVGYARASAAVITKRAGVSVGALFRHFDTMGDFMA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ATASEVLRRQLESFTKRVADIPADQPVLEVVLGILRDLTSGPVNAVIYELTVAARTDEKL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
RETLQHELAQYAAKIDEVSRALPGVEGFPADTFPVLVALMRNVFDGAAVVEGVLPQPEIA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ARRIPVLTALLNAALPP
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]