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The map label for this gene is rimM

Identifier: 41409073

GI number: 41409073

Start: 3309187

End: 3309714

Strand: Reverse

Name: rimM

Synonym: MAP2975c

Alternate gene names: 41409073

Gene position: 3309714-3309187 (Counterclockwise)

Preceding gene: 41409074

Following gene: 41409072

Centisome position: 68.53

GC content: 71.02

Gene sequence:

>528_bases
TTGGAGTTGACCGTCGGGCGCGTGGTCAAAGCGCACGGCATCAGCGGTGAGATCGTCGTCGAGATCCGCACCGACGATCC
CGCCGCCCGATTCGCACCGGGTAACACGTTGCGCGCCAAGCCTTCCCGTGGCGGCCCGGAACGCAGCTGCGTCATCGAGA
GCGCGCGTGAGCACGGCGGGCGGCTGCTGGTGCGGCTGGCCGGCGTCACCGACCGGGACGCCGCCGACGCGCTGCGCGGC
ACCCTGTTCGTCGTCGACTCCGCCGAGTTGCCCGACATCGACGAGCCCGACACCTACTACGACCATCAACTCGAGGGCCT
GCAGGTGCGCACCACCGGCGGCCGGCGGGTCGGTGCGGTCGCCGAGGTGCTGCACACCGCCGCCGGCGAGTTGCTGGCGG
TGCGTGACGACGCGGACGGTGCGCCGCGAGAAGTGTTGGTGCCGTTCGTCAGCGCGATCGTCACCGCGGTGTCGCTGGAC
GACGGGCTCATCGAGATCGATCCGCCCGACGGCCTGCTGGACCTGTAG

Upstream 100 bases:

>100_bases
CGGCGGTCGCACCGCGACGGCGTTGCGCACGCTGGTCGCCGGCATCGGCGGACGCGGGATCCGCGTCGACGTGGTGGACA
CCGACCAGTAGGGAACTCCC

Downstream 100 bases:

>100_bases
GCCGGCATGAGAATCGACGTCGTCACCATCTTTCCGGCCTACCTGGACCCGCTGCGGCAGTCGTTGCCGGGCAAGGCGAT
TCAGTCCGGCCTGGTCGATC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVTDRDAADALRG
TLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGAVAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLD
DGLIEIDPPDGLLDL

Sequences:

>Translated_175_residues
MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVTDRDAADALRG
TLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGAVAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLD
DGLIEIDPPDGLLDL
>Mature_175_residues
MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVTDRDAADALRG
TLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGAVAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLD
DGLIEIDPPDGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=174, Percent_Identity=32.7586206896552, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18523; Mature: 18523

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGG
CCCCHHCEEEECCCCCEEEEEEECCCCCCEECCCCCEEECCCCCCCCHHHHHHHHHHCCC
RLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGAV
EEEEEEECCCCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
AEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGG
CCCCHHCEEEECCCCCEEEEEEECCCCCCEECCCCCEEECCCCCCCCHHHHHHHHHHCCC
RLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGAV
EEEEEEECCCCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
AEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA