| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409065
Identifier: 41409065
GI number: 41409065
Start: 3302708
End: 3303697
Strand: Reverse
Name: 41409065
Synonym: MAP2967c
Alternate gene names: NA
Gene position: 3303697-3302708 (Counterclockwise)
Preceding gene: 41409067
Following gene: 41409064
Centisome position: 68.4
GC content: 73.03
Gene sequence:
>990_bases GTGGGTGTGACCGTCGCGGTGACCGGACCGACGGGGGAGATCGGCCGCTCCGCGGTGACGGCACTGGAGCGCGAACCGGG CGTGGACGCGATCATCGGGATGGCTCGCCGGCCGTTCTCCCCGTCCTCGCGCGGCTGGCAGAAGACCACCTACCAGCAGG GCGACATCCTGGACCGGGAGGCCGTCGACGCGGTGGTCGCGCAGGCCGACGTGGTGATCCACCTGGCCTTCATCATCATG GGTTCGCGCGACGAGAGCGCCCGCGTCAACCTGCAGGGCACCCGCAACGTCTTCGAGGCAACGGTGGCGGCCGGGCGGCC GCGGCGCCTGGTGTACACGTCGTCGGTGGCGGCCTACGGCTACCACTCCGACAACCCCGTCCCGCTGACCGAGGACGTGC CGGCGCGCGGGTCCGCCGAGCATTACTACTCCGCGCAGAAGGCCGCGTCCGAGGCGATGCTCGCCGAGATCACCAAGGAT TCGCCGCTGGAGGTGTTCGTGCTGCGGCCCTGCATCGTGGCCGGGCCGGGCGCGACCGCGCTGGCCGACGCGATGCCGTG GAACCAGCTGCCCGGCCCGCTGCGCGCCATCGTCAAAGCGGTGCAGGCGATCCCGGTGCTCAAGCCGGTGGTGCCGGACC CCGGTTATCCGCTGCAGTTGGTCCACCACGACGACGTGGCGTCGGCCATCGCGCTGGCCGCCACCGCGCCGGCGCCCCCG GGGGCGTACAACATCGCCGGCGACGGGGTGGTGACGGTGGCCGACGTGGCCAAGGCGCTGGGCGGGCGGCCGGTGCGGGT GCCGGCCGTGGCGGCGACGGCGGCCTCGGCGGCGATATCCAAGGCGCCGCTGGTGCCCTCGATGCTGGAATGGCTGCACA CCGCGCGCACGTCGATGGTGATGGACACCACCAAGGCCAAAACCCAACTGGGCTGGCGGCCCGTGCACACCTCGGCGCAG GCGCTGGCGGCGCTGGCGTCGGCGGTGTGA
Upstream 100 bases:
>100_bases ATGATGGTTCTACCACGCGCCGAGCGGGCGTGCGCGACGCCGGCCTCGCACGGTTTCGGCCGGCCGCCGGGGGGAAGGAC GTCTGAATGGGGGTGACCGA
Downstream 100 bases:
>100_bases TCGGCTCGTGGGTCTCCCGCGGCTCGCTGACCCACCGGTCGCGGTAGTTTGAGGCGGTGCAGGTAACGTCGCGCCGGCGG GTCACGCATCTGACCGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MGVTVAVTGPTGEIGRSAVTALEREPGVDAIIGMARRPFSPSSRGWQKTTYQQGDILDREAVDAVVAQADVVIHLAFIIM GSRDESARVNLQGTRNVFEATVAAGRPRRLVYTSSVAAYGYHSDNPVPLTEDVPARGSAEHYYSAQKAASEAMLAEITKD SPLEVFVLRPCIVAGPGATALADAMPWNQLPGPLRAIVKAVQAIPVLKPVVPDPGYPLQLVHHDDVASAIALAATAPAPP GAYNIAGDGVVTVADVAKALGGRPVRVPAVAATAASAAISKAPLVPSMLEWLHTARTSMVMDTTKAKTQLGWRPVHTSAQ ALAALASAV
Sequences:
>Translated_329_residues MGVTVAVTGPTGEIGRSAVTALEREPGVDAIIGMARRPFSPSSRGWQKTTYQQGDILDREAVDAVVAQADVVIHLAFIIM GSRDESARVNLQGTRNVFEATVAAGRPRRLVYTSSVAAYGYHSDNPVPLTEDVPARGSAEHYYSAQKAASEAMLAEITKD SPLEVFVLRPCIVAGPGATALADAMPWNQLPGPLRAIVKAVQAIPVLKPVVPDPGYPLQLVHHDDVASAIALAATAPAPP GAYNIAGDGVVTVADVAKALGGRPVRVPAVAATAASAAISKAPLVPSMLEWLHTARTSMVMDTTKAKTQLGWRPVHTSAQ ALAALASAV >Mature_328_residues GVTVAVTGPTGEIGRSAVTALEREPGVDAIIGMARRPFSPSSRGWQKTTYQQGDILDREAVDAVVAQADVVIHLAFIIMG SRDESARVNLQGTRNVFEATVAAGRPRRLVYTSSVAAYGYHSDNPVPLTEDVPARGSAEHYYSAQKAASEAMLAEITKDS PLEVFVLRPCIVAGPGATALADAMPWNQLPGPLRAIVKAVQAIPVLKPVVPDPGYPLQLVHHDDVASAIALAATAPAPPG AYNIAGDGVVTVADVAKALGGRPVRVPAVAATAASAAISKAPLVPSMLEWLHTARTSMVMDTTKAKTQLGWRPVHTSAQA LAALASAV
Specific function: Putative nucleotide sugar epimerase/dehydrogenase [H]
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: NA
Molecular weight: Translated: 34208; Mature: 34077
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVTVAVTGPTGEIGRSAVTALEREPGVDAIIGMARRPFSPSSRGWQKTTYQQGDILDRE CCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH AVDAVVAQADVVIHLAFIIMGSRDESARVNLQGTRNVFEATVAAGRPRRLVYTSSVAAYG HHHHHHHHHHHHHEEEEHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCEEEEC YHSDNPVPLTEDVPARGSAEHYYSAQKAASEAMLAEITKDSPLEVFVLRPCIVAGPGATA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCHHH LADAMPWNQLPGPLRAIVKAVQAIPVLKPVVPDPGYPLQLVHHDDVASAIALAATAPAPP HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCC GAYNIAGDGVVTVADVAKALGGRPVRVPAVAATAASAAISKAPLVPSMLEWLHTARTSMV CCEEECCCCEEEHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH MDTTKAKTQLGWRPVHTSAQALAALASAV HCCHHHHHHCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure GVTVAVTGPTGEIGRSAVTALEREPGVDAIIGMARRPFSPSSRGWQKTTYQQGDILDRE CEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH AVDAVVAQADVVIHLAFIIMGSRDESARVNLQGTRNVFEATVAAGRPRRLVYTSSVAAYG HHHHHHHHHHHHHEEEEHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCEEEEC YHSDNPVPLTEDVPARGSAEHYYSAQKAASEAMLAEITKDSPLEVFVLRPCIVAGPGATA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCHHH LADAMPWNQLPGPLRAIVKAVQAIPVLKPVVPDPGYPLQLVHHDDVASAIALAATAPAPP HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCC GAYNIAGDGVVTVADVAKALGGRPVRVPAVAATAASAAISKAPLVPSMLEWLHTARTSMV CCEEECCCCEEEHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH MDTTKAKTQLGWRPVHTSAQALAALASAV HCCHHHHHHCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]