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The map label for this gene is hemY'

Identifier: 41408896

GI number: 41408896

Start: 3127812

End: 3129167

Strand: Reverse

Name: hemY'

Synonym: MAP2798c

Alternate gene names: 41408896

Gene position: 3129167-3127812 (Counterclockwise)

Preceding gene: 41408897

Following gene: 41408895

Centisome position: 64.79

GC content: 77.21

Gene sequence:

>1356_bases
ATGACGGCCCGCTCGTATTGTGTTGTGGGCGGCGGTATTTCAGGGCTGACGGCGGCCTACCGGCTGCGGGTGGCGGCCGG
CGACGACGCGGTGATCACGCTGCTCGACCCGGCGCCGCAGCTCGGCGGCATCCTGCGCACCGAGCCGGTCGGCGGCGTGC
CGATGGACCTGGGCGCCGAGGCGTTCGTGCTACGCCGCCCCGAGCTGCCCGCGCTGCTGAGTGAAGTGAATCTGACTGGC
CGCCAACGCGTTTCGACCGGCGCACGCCCGCTGATCTACAGCCGGGGACGGCTGCACCCGCTGCCCACCGGCACGGTGGT
GGGCATCCCGTCGTCGGCGGCGTCGATGGCCAGACTGGTCGACGAGGCGACGCTGGCCCGCATCGACGCCGAACCGCGGC
GGCCGCTGCACTGGCGCCCCGGCAGCGATCCCGCGGTGGCCGACCTGGTGGGCGATCGGTTCGGCGAGCAGGTGGTGTCG
CGGTCGGTGGATCCGCTGCTGAGCGGGGTGTACGCCGGCTCGGCGGCCACCATTGGGCTGCGCGCGGCCGCCCCCACCGT
GGCGGCGGCCCTGGACCGCGGCGCCGCCAGCCTGACCGACGCGGTCCGGCGCGCCCTGCCGCCGGCCACCGGGGCGCCGG
TGTTCGGTGCGCTGGACGGCGGCTACCGGGTGCTGGTCGACGAGCTGGTCGCGCGCGCCCGCCCGCGGCGGGTCCGGGCC
GCGGCGGCCCGGCTGGAACCCGCCGGGCCGGGATGGGCCGTGGTCGACGACGCCGGTGCCCGCCGGCACGCCGACGCGGT
GATCCTGGCCGTGCCGGCGCGGGAGGTCGCGCGGCTGCTGGCCGGGATCGCCCCGCGCAGCGCCGCCGCCGCCGGCCGCG
TCGTCGCCGCGTCGTCGGTGGTGCTGGCGCTCGCGGTGCCGGGCGACACCGCGTTTCCCGACTGCTCCGGCGTGCTGGTC
GCCACCGGCGAGCGGTTGCGGGCCAAGGCCATCACGCTGTCGTCCAAGAAATGGGGGACGCGCGCGGACGTGCAGCTGCT
GCGGTTGTCGTTCGGCCGGTTCGGCGACCAGGTGGCCGCCCGCACCCCCGACGAGGAGCTGCGCGGCTGGGCGCTGGCCG
ACCTGGCCGCCGTGTTCGGGCTGGATGTCCGCCCGGTGGACGTGCGGGTGCAGCGCTGGCTCGACGCCATGCCGCAGTAC
GGGCCCGGCCATGCCGAGCTGGTCGGCGAGCTGCGCGCGGGCCTGCCGCCGACGCTCGCGGTGGCCGGCGGCTACCTGGA
CGGCATCGGGGTGCCCGCCTGCGTGGGCGCGGCCGGGCGCGCGGTCGAGGCCCTTCAGGCGGAAGTGGCACCATAG

Upstream 100 bases:

>100_bases
ACGCCGGCGCGGCCGGGCACGTGTTCAACCTCGGCCACGGGGTGCTGCCCGAAACCGATCCCGGTGTGCTGACCGAGCTG
GTGTCACTGGTCCACTCGCT

Downstream 100 bases:

>100_bases
GTCGCATGGCCAAGCTTGACTATGACGCGCTGAACTCGGCGATCCGCTACCTGATGTTCTCGGTGTTCGCCGTGCGCCCG
GGCGCGTTGGGGGACCAGCG

Product: protoporphyrinogen oxidase

Products: NA

Alternate protein names: PPO [H]

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MTARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAEAFVLRRPELPALLSEVNLTG
RQRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLVDEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVS
RSVDPLLSGVYAGSAATIGLRAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRA
AAARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSVVLALAVPGDTAFPDCSGVLV
ATGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAARTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQY
GPGHAELVGELRAGLPPTLAVAGGYLDGIGVPACVGAAGRAVEALQAEVAP

Sequences:

>Translated_451_residues
MTARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAEAFVLRRPELPALLSEVNLTG
RQRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLVDEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVS
RSVDPLLSGVYAGSAATIGLRAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRA
AAARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSVVLALAVPGDTAFPDCSGVLV
ATGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAARTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQY
GPGHAELVGELRAGLPPTLAVAGGYLDGIGVPACVGAAGRAVEALQAEVAP
>Mature_450_residues
TARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAEAFVLRRPELPALLSEVNLTGR
QRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLVDEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVSR
SVDPLLSGVYAGSAATIGLRAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRAA
AARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSVVLALAVPGDTAFPDCSGVLVA
TGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAARTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQYG
PGHAELVGELRAGLPPTLAVAGGYLDGIGVPACVGAAGRAVEALQAEVAP

Specific function: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX [H]

COG id: COG1232

COG function: function code H; Protoporphyrinogen oxidase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protoporphyrinogen oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR004572 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: =1.3.3.4 [H]

Molecular weight: Translated: 46391; Mature: 46260

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAE
CCCCCEEEECCCHHHHHEEEEEEEECCCCEEEEEECCCHHHCCEEEECCCCCCCCCCCCC
AFVLRRPELPALLSEVNLTGRQRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLV
EEEEECCCHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHH
DEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVSRSVDPLLSGVYAGSAATIGL
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
RAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRA
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHH
AAARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSV
HHHHCCCCCCCEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCCHHHHHCCCEEECEE
VLALAVPGDTAFPDCSGVLVATGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAA
EEEEECCCCCCCCCCCCEEEECCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHC
RTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQYGPGHAELVGELRAGLPPTLA
CCCHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHH
VAGGYLDGIGVPACVGAAGRAVEALQAEVAP
HCCCCCCCCCCHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAE
CCCCEEEECCCHHHHHEEEEEEEECCCCEEEEEECCCHHHCCEEEECCCCCCCCCCCCC
AFVLRRPELPALLSEVNLTGRQRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLV
EEEEECCCHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHH
DEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVSRSVDPLLSGVYAGSAATIGL
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
RAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRA
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHH
AAARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSV
HHHHCCCCCCCEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCCHHHHHCCCEEECEE
VLALAVPGDTAFPDCSGVLVATGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAA
EEEEECCCCCCCCCCCCEEEECCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHC
RTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQYGPGHAELVGELRAGLPPTLA
CCCHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHH
VAGGYLDGIGVPACVGAAGRAVEALQAEVAP
HCCCCCCCCCCHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]