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The map label for this gene is yagI [H]

Identifier: 41408836

GI number: 41408836

Start: 3070917

End: 3071732

Strand: Reverse

Name: yagI [H]

Synonym: MAP2738c

Alternate gene names: 41408836

Gene position: 3071732-3070917 (Counterclockwise)

Preceding gene: 41408839

Following gene: 41408831

Centisome position: 63.6

GC content: 73.77

Gene sequence:

>816_bases
ATGCCAGCCAAGCGTGCGCGAGTCGCCGGGCCAGCCGCGGCCGCGCCGGCCGCCGATGCGCTTGCGCCGCAGTATCCAAT
CGAATCGGTCGACAACGCGCTCAAGCTGTTGCTGCTGCTGGGTGAGCAACCCGAGATCCGGTTGAGCGAGGCGACCCGCT
ATCTGGGTGTGGCGTCCTCGACGGCGCACCGGCTGCTGGCGATGCTGGCCTACCGCGGATTCGTCCGGCAGGACCCGGTG
TCCAAGGCGTATCTGCCCGGCCCGTCGCTGACCGGTGTGGCGTTCGCCATCTTCGGCCGCCTCGACATCGCGCGATCGGC
CGCGCCCCTCATGCGCGCGCTCAGCGAGCAGCTGCGCGAGACGGTGCACGTCGGCATGCTCGACGGGGCCAGCGTGCGGT
TCGTCGCCGCCGTCGAGGGCCCGGCCGCGGTGCGGGTGGCCTCCCGGCTGGGCCGCGCCTTGCCGGCGCATTGCACCTCG
ACGGGCAAGGTGATGCTGGCACAGTTGTCCGCGGCCGAACTGCGGGCGCTGCTGCCGCGCGAGCGGCTCAAGCGCATCAC
CGCGCATTCCATCGGCAGCCGCGCCGCGCTGGAGGCCGAGCTGGCCGCGATCCGCGAGCGCGGCTACGCCACCAACCGGG
AGGAGAGCGAGGAGGGTGTCGCGTCGGTCGCCGTGCCGATCCCGACCCGGGCGCCCGGGCTGCGGCTGGCCCTGAACGCC
GCCGCCCCGCAGAACCGGCTGGACGCCGCCCGCTACCCCGCGGTGGCCGCCGCACTTGTGGCCGCCGCCAAGGAGATCGG
CGATCAGCTCGGCTAG

Upstream 100 bases:

>100_bases
TCGCCGATGGCGACGTAACGGCGGTATCCAGGGTGAATGGCCCCGCTCACGAAGCCGAGAATAACGCGAAGCCGGGCCGG
CGACTGGTTACCGTGGAGCC

Downstream 100 bases:

>100_bases
CCTTCGATCCGCGCCACCTCGTGTCGCCAGGCCGCCTCGGCGGTGAACGCCGGCCCCAGGTCCGGCAGGTCGTCCCAGTC
GACGTCGGCGATGTCGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPAKRARVAGPAAAAPAADALAPQYPIESVDNALKLLLLLGEQPEIRLSEATRYLGVASSTAHRLLAMLAYRGFVRQDPV
SKAYLPGPSLTGVAFAIFGRLDIARSAAPLMRALSEQLRETVHVGMLDGASVRFVAAVEGPAAVRVASRLGRALPAHCTS
TGKVMLAQLSAAELRALLPRERLKRITAHSIGSRAALEAELAAIRERGYATNREESEEGVASVAVPIPTRAPGLRLALNA
AAPQNRLDAARYPAVAAALVAAAKEIGDQLG

Sequences:

>Translated_271_residues
MPAKRARVAGPAAAAPAADALAPQYPIESVDNALKLLLLLGEQPEIRLSEATRYLGVASSTAHRLLAMLAYRGFVRQDPV
SKAYLPGPSLTGVAFAIFGRLDIARSAAPLMRALSEQLRETVHVGMLDGASVRFVAAVEGPAAVRVASRLGRALPAHCTS
TGKVMLAQLSAAELRALLPRERLKRITAHSIGSRAALEAELAAIRERGYATNREESEEGVASVAVPIPTRAPGLRLALNA
AAPQNRLDAARYPAVAAALVAAAKEIGDQLG
>Mature_270_residues
PAKRARVAGPAAAAPAADALAPQYPIESVDNALKLLLLLGEQPEIRLSEATRYLGVASSTAHRLLAMLAYRGFVRQDPVS
KAYLPGPSLTGVAFAIFGRLDIARSAAPLMRALSEQLRETVHVGMLDGASVRFVAAVEGPAAVRVASRLGRALPAHCTST
GKVMLAQLSAAELRALLPRERLKRITAHSIGSRAALEAELAAIRERGYATNREESEEGVASVAVPIPTRAPGLRLALNAA
APQNRLDAARYPAVAAALVAAAKEIGDQLG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=225, Percent_Identity=36.8888888888889, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1788131, Length=251, Percent_Identity=34.2629482071713, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87082359, Length=270, Percent_Identity=30.3703703703704, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786715, Length=224, Percent_Identity=27.6785714285714, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789999, Length=248, Percent_Identity=25.8064516129032, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788581, Length=217, Percent_Identity=24.8847926267281, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28368; Mature: 28237

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKRARVAGPAAAAPAADALAPQYPIESVDNALKLLLLLGEQPEIRLSEATRYLGVASS
CCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHH
TAHRLLAMLAYRGFVRQDPVSKAYLPGPSLTGVAFAIFGRLDIARSAAPLMRALSEQLRE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVHVGMLDGASVRFVAAVEGPAAVRVASRLGRALPAHCTSTGKVMLAQLSAAELRALLPR
HHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCH
ERLKRITAHSIGSRAALEAELAAIRERGYATNREESEEGVASVAVPIPTRAPGLRLALNA
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCEEEEEC
AAPQNRLDAARYPAVAAALVAAAKEIGDQLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAKRARVAGPAAAAPAADALAPQYPIESVDNALKLLLLLGEQPEIRLSEATRYLGVASS
CCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHH
TAHRLLAMLAYRGFVRQDPVSKAYLPGPSLTGVAFAIFGRLDIARSAAPLMRALSEQLRE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVHVGMLDGASVRFVAAVEGPAAVRVASRLGRALPAHCTSTGKVMLAQLSAAELRALLPR
HHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCH
ERLKRITAHSIGSRAALEAELAAIRERGYATNREESEEGVASVAVPIPTRAPGLRLALNA
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCEEEEEC
AAPQNRLDAARYPAVAAALVAAAKEIGDQLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]