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The map label for this gene is 41408264

Identifier: 41408264

GI number: 41408264

Start: 2397944

End: 2398834

Strand: Direct

Name: 41408264

Synonym: MAP2166

Alternate gene names: NA

Gene position: 2397944-2398834 (Clockwise)

Preceding gene: 41408263

Following gene: 41408276

Centisome position: 49.65

GC content: 74.52

Gene sequence:

>891_bases
ATGACGAGCCCGGATGCGGCGGACCTGACGGCCCGGTTCGAGGCGGCCCGGCCCCAGCTGGGCGCCCTCTCCTACCGCAT
GCTTGGCTCGATCGATGACGCCCAGGACGCCGTGCAGGAGGCCTGGCTGCGGCTCGACCGCAGCGGCGGCGCGGACATCG
CCAACCTGGACGCCTGGCTGACCACGGTGGTGGCCCGCATCTGCCTGAACATGTTGCGCGACCGCCGAACTCGCGACGGC
GCCGAGCCGGCGGCCCACCTGCCGGACCCGATCGTGGAGCCGGCCGGCGAGTTCGATCCCGAGCACCGCGCGATGCTGGC
CGACGCGGTGGGGATGGCGCTGTTCGTGGTGCTGGACACGCTGCCGCCGGCGGAGCGGCTGGCGTTCGTGCTGCACGACG
TGTTCGCCGTCCCGTTCGCGCAGATCGCCGCGATCGTGGACGGCACGCCGGAGTCGGCCCGCAAGCTGGCCAGCCGGGCG
CGCCGACGCATCGAGCGGGCCGATCCGGTCCCGGACGGCGACCTGGCCGCGCAGCGCGAGGTGGTCGACGCCTTCTTCGC
GGCGGGCCGCAGCGGGGACTTCGACCGCCTGGTGTCGGTGCTGCATCCCGACGTGGTGCTGCGCGGCGACTTCGGGCCGG
CCACCGCGACGGTTCGGGTGCAGGGCGCGGCCGCGGTGGCCAAGCTGGCCCGCAGCTACGCGGGGCCCGAGCGCGAGGCA
TGGGCCGCGACGGTCAACGGCGCCGCGGGTGCCGTCATCTTCGTCGCAGGCCGCGCCGCGTCGGTCATGGGTTTCGTGGT
GCGCGGCGGCCGGATCCGCGCGATCGACGTGCTGGCGGATCCGGACCGCATCGCGAAACTGGAGCTGGGTGCGCTACGCG
CCGATCACTGA

Upstream 100 bases:

>100_bases
CGCTGGGCAACCTGCGCGCCCGCTTCAACATCGCGCTCGGCATCGGGTCGTCGGGGTTCTCCGGGAACCGGGTGTGTGCG
CTGCCCGACACCCCGCGGCC

Downstream 100 bases:

>100_bases
CCGGCGGCCTGCAGCAACTCCATCGCCGACGCCCGCGACAGCACCCAGCCGCCCTGGTTGACAAAGGTGACGTTCTGGGT
GACCGGCGAGGTCAGCTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; ECF-Sigma Factor; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigI; ECF Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; Sigma-70 Family RNA Polymerase; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Region 2 Domain-Containing Protein; Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigJ-Like Protein; RNA Polymerase Sigma-70 Factor Family; Sigma Factor Sigma; RNA Polymerase ECF-Type Sigma Factor SigJ; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTSPDAADLTARFEAARPQLGALSYRMLGSIDDAQDAVQEAWLRLDRSGGADIANLDAWLTTVVARICLNMLRDRRTRDG
AEPAAHLPDPIVEPAGEFDPEHRAMLADAVGMALFVVLDTLPPAERLAFVLHDVFAVPFAQIAAIVDGTPESARKLASRA
RRRIERADPVPDGDLAAQREVVDAFFAAGRSGDFDRLVSVLHPDVVLRGDFGPATATVRVQGAAAVAKLARSYAGPEREA
WAATVNGAAGAVIFVAGRAASVMGFVVRGGRIRAIDVLADPDRIAKLELGALRADH

Sequences:

>Translated_296_residues
MTSPDAADLTARFEAARPQLGALSYRMLGSIDDAQDAVQEAWLRLDRSGGADIANLDAWLTTVVARICLNMLRDRRTRDG
AEPAAHLPDPIVEPAGEFDPEHRAMLADAVGMALFVVLDTLPPAERLAFVLHDVFAVPFAQIAAIVDGTPESARKLASRA
RRRIERADPVPDGDLAAQREVVDAFFAAGRSGDFDRLVSVLHPDVVLRGDFGPATATVRVQGAAAVAKLARSYAGPEREA
WAATVNGAAGAVIFVAGRAASVMGFVVRGGRIRAIDVLADPDRIAKLELGALRADH
>Mature_295_residues
TSPDAADLTARFEAARPQLGALSYRMLGSIDDAQDAVQEAWLRLDRSGGADIANLDAWLTTVVARICLNMLRDRRTRDGA
EPAAHLPDPIVEPAGEFDPEHRAMLADAVGMALFVVLDTLPPAERLAFVLHDVFAVPFAQIAAIVDGTPESARKLASRAR
RRIERADPVPDGDLAAQREVVDAFFAAGRSGDFDRLVSVLHPDVVLRGDFGPATATVRVQGAAAVAKLARSYAGPEREAW
AATVNGAAGAVIFVAGRAASVMGFVVRGGRIRAIDVLADPDRIAKLELGALRADH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31470; Mature: 31339

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPDAADLTARFEAARPQLGALSYRMLGSIDDAQDAVQEAWLRLDRSGGADIANLDAWL
CCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TTVVARICLNMLRDRRTRDGAEPAAHLPDPIVEPAGEFDPEHRAMLADAVGMALFVVLDT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
LPPAERLAFVLHDVFAVPFAQIAAIVDGTPESARKLASRARRRIERADPVPDGDLAAQRE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VVDAFFAAGRSGDFDRLVSVLHPDVVLRGDFGPATATVRVQGAAAVAKLARSYAGPEREA
HHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCCHH
WAATVNGAAGAVIFVAGRAASVMGFVVRGGRIRAIDVLADPDRIAKLELGALRADH
HHEEECCCCCEEEEEECCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSPDAADLTARFEAARPQLGALSYRMLGSIDDAQDAVQEAWLRLDRSGGADIANLDAWL
CCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TTVVARICLNMLRDRRTRDGAEPAAHLPDPIVEPAGEFDPEHRAMLADAVGMALFVVLDT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
LPPAERLAFVLHDVFAVPFAQIAAIVDGTPESARKLASRARRRIERADPVPDGDLAAQRE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VVDAFFAAGRSGDFDRLVSVLHPDVVLRGDFGPATATVRVQGAAAVAKLARSYAGPEREA
HHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCCHH
WAATVNGAAGAVIFVAGRAASVMGFVVRGGRIRAIDVLADPDRIAKLELGALRADH
HHEEECCCCCEEEEEECCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA