| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is dnaG
Identifier: 41408228
GI number: 41408228
Start: 2359284
End: 2361236
Strand: Reverse
Name: dnaG
Synonym: MAP2130c
Alternate gene names: 41408228
Gene position: 2361236-2359284 (Counterclockwise)
Preceding gene: 41408229
Following gene: 41408226
Centisome position: 48.89
GC content: 70.71
Gene sequence:
>1953_bases ATGTCCAGCCCGGCAGGTTCACGCGCCCAGGGCGATGGCCGTGCCCGGGGCCGGGGCCGGATTCCCGACCGCGACATCGC CGCCATCCGCGAACGGGTGCGCATCGATGAAGTGGTCGGCGATTACGTCCAATTGCGGCGTGCCGGTGCGGATTCGCTCA AGGGCCTGTGCCCGTTTCACGACGAGAAGTCGCCGTCGTTTCACGTCCGCCCCAACCACGGGCACTTCCACTGCTTCGGC TGCGGCGAGGGCGGCGACGTGTACGCGTTCCTCCAGAAGATCGAGCACGTCAGCTTCGTCGAGGCCGTCGAACTGCTCGC CGACCGGATCGGCCACACGATCACCTACTCCGGCCCGGCCACCAGCGTGCAGCGCGACCGCGGCAGCCGCAGCCGGCTCA TCGCGGCCAACGCGGCCGCGGCGGAGTTCTACGCGGCGGCGCTCGAGTCCGACGAGGCGGCGCCGGCCCGCCAGTATCTG ACCGAACGCAACTTCGATGCCGAGGCGGCCCGTCGCTTCGGTTGCGGATTTGCACCGTCGGGCTGGGATACGCTGACAAA ACACCTGCAGCGCAAGGGTTTTGAGTTCAAGGAGCTGGAGGCGGCCGGCCTGTCGCGGCAGGGCCGGCGTGGCCCGATGG ACCGGTTCCACCGGCGGCTGCTGTGGCCCATCCGCAGCTCGGCCGGTGAGGTGATCGGGTTCGGCGCCCGCCGGCTGTTC GACGACGATCCGATGGAAGCCAAGTACATCAACACGCCCGAGACGCTGCTGTACAAGAAGTCGAACGTGATGTTCGGCAT CGATCTGGCCAAACGCGACATCGCCAAGGGCCACCAGGCCGTCGTCGTCGAGGGCTACACCGACGTGATGGCGATGCATC TGGCCGGGGTCACCACTGCGGTGGCCTCCTGCGGCACCGCCTTCGGCGACGAGCATCTGGCGATGCTGCGCCGACTCATG ATGGACGACAGCTTCTTTCGCGGTGAACTGATCTACGTCTTCGACGGCGACGCGGCGGGGCGGGCCGCGGCGCTCAAGGC GTTCGGCGGCGAGCAGAACCTGGCCGGGCAGTCCTTCGTCGCGGTCGCGCCGGACGGCATGGATCCCTGCGACCTGCGGC TGCGCTCCGGCGACGCCGCGCTGCGCGACCTGGTGGCCCGGCGAACACCGTTGTTCGAGTTCGCAATCCGGTCGGCGCTC GCCGAGCTGGACCTGGACAGCGCCGAGGGCAGGGTGGCCGCGCTGCGCCGCTGCGTGCCGATGGTGGCCCAGATCAAGGA CCCCACGCTGCGCGACGAGTACGCCCGCCAGCTCGCCGGCTGGGTCGGCTGGAGCGACGTCGCGCAGGTCATCGACCGGG TGCGCAGCCAGTCCAAGCACTCCGCCGGCGCGGGCCGCGGCGGCTCCGGCGCCAGGGTCTCCCGCCGCGCCGAGCAGTCC GCCGCCCCGGCCGGTCCCGCCGCCAGCCGTCCCGACCCCCGCGATCCCACCCTGTGGCCGCAGCGGGAGGCACTCAAGTC GGCGTTGCAGTACCCGGCGCTGGCCGGGCCGGTGTTCGACTCGCTGACCGTCGAGAGCTTCACCCATCCCGGGTACGCCG CCGTGCGTGCCGCGATCGAGGCGGCCGGCGGCACGTCGAGCGGTGTCACCGGCGGGCAGTGGATCGAGGCGGTGCGCGAC CGGGCCTCCTCGCCGCTGACGGCGGGGCTGATCAGCGAACTGGGTGTCGAGGCCATCCAGGTCGACGACGAGAAGCTGCC GCGCTACATCGCCGGCGTGCTGGCCCGGCTGCAGGAGGTGTGGATGGGTCGGCAGATCGCCGAGGTGAAGTCGAAGCTGC AGCGCATGTCGCCCATCGAGCAGGGCGACGAATACCACGCGCTGTTCGGGGACCTGGTGGCGATGGAGGCCTACCGGCGC AGCCTGTTGGAGCAGGCTAGCGGGGACGATTAG
Upstream 100 bases:
>100_bases CCGAGGACACCGAAAACGCGATGGACCGGGTTGCCTGCGGTGTCATCGGTACCGGATAGCTTTTCCGTACCCGGCGCGCT GCGCGCCTTACACTGAGCCG
Downstream 100 bases:
>100_bases ACGGCGCCAAGGCCTCGTCGGCCGGCTCGGCCTCGCGTTCCATGATGGCGGTCCGGTCGTCGATCTGCGTCAGCGTGACG AACCCGGCGTCGGGCGAGAT
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 650; Mature: 649
Protein sequence:
>650_residues MSSPAGSRAQGDGRARGRGRIPDRDIAAIRERVRIDEVVGDYVQLRRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFG CGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAANAAAAEFYAAALESDEAAPARQYL TERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEFKELEAAGLSRQGRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLF DDDPMEAKYINTPETLLYKKSNVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLAMLRRLM MDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAPDGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSAL AELDLDSAEGRVAALRRCVPMVAQIKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQS AAPAGPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGGTSSGVTGGQWIEAVRD RASSPLTAGLISELGVEAIQVDDEKLPRYIAGVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRR SLLEQASGDD
Sequences:
>Translated_650_residues MSSPAGSRAQGDGRARGRGRIPDRDIAAIRERVRIDEVVGDYVQLRRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFG CGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAANAAAAEFYAAALESDEAAPARQYL TERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEFKELEAAGLSRQGRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLF DDDPMEAKYINTPETLLYKKSNVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLAMLRRLM MDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAPDGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSAL AELDLDSAEGRVAALRRCVPMVAQIKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQS AAPAGPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGGTSSGVTGGQWIEAVRD RASSPLTAGLISELGVEAIQVDDEKLPRYIAGVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRR SLLEQASGDD >Mature_649_residues SSPAGSRAQGDGRARGRGRIPDRDIAAIRERVRIDEVVGDYVQLRRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFGC GEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAANAAAAEFYAAALESDEAAPARQYLT ERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEFKELEAAGLSRQGRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFD DDPMEAKYINTPETLLYKKSNVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLAMLRRLMM DDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAPDGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALA ELDLDSAEGRVAALRRCVPMVAQIKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQSA APAGPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGGTSSGVTGGQWIEAVRDR ASSPLTAGLISELGVEAIQVDDEKLPRYIAGVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRS LLEQASGDD
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=549, Percent_Identity=31.3296903460838, Blast_Score=237, Evalue=2e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 70602; Mature: 70471
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPAGSRAQGDGRARGRGRIPDRDIAAIRERVRIDEVVGDYVQLRRAGADSLKGLCPFH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC DEKSPSFHVRPNHGHFHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPA CCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC TSVQRDRGSRSRLIAANAAAAEFYAAALESDEAAPARQYLTERNFDAEAARRFGCGFAPS CHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCC GWDTLTKHLQRKGFEFKELEAAGLSRQGRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLF CHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHC DDDPMEAKYINTPETLLYKKSNVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTA CCCCCCCEECCCCHHHEEECCCEEEEEHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHH VASCGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFV HHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEE AVAPDGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVP EECCCCCCHHHEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH MVAQIKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQS HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH AAPAGPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH AAGGTSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLPRYIAGVLARLQEV HCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH WMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQASGDD HHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SSPAGSRAQGDGRARGRGRIPDRDIAAIRERVRIDEVVGDYVQLRRAGADSLKGLCPFH CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC DEKSPSFHVRPNHGHFHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPA CCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC TSVQRDRGSRSRLIAANAAAAEFYAAALESDEAAPARQYLTERNFDAEAARRFGCGFAPS CHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCC GWDTLTKHLQRKGFEFKELEAAGLSRQGRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLF CHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHC DDDPMEAKYINTPETLLYKKSNVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTA CCCCCCCEECCCCHHHEEECCCEEEEEHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHH VASCGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFV HHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEE AVAPDGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVP EECCCCCCHHHEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH MVAQIKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQS HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH AAPAGPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH AAGGTSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLPRYIAGVLARLQEV HCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHH WMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQASGDD HHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]