Click here to switch to the map view.

The map label for this gene is ygcU [H]

Identifier: 41408102

GI number: 41408102

Start: 2211888

End: 2213468

Strand: Direct

Name: ygcU [H]

Synonym: MAP2004

Alternate gene names: 41408102

Gene position: 2211888-2213468 (Clockwise)

Preceding gene: 41408098

Following gene: 41408103

Centisome position: 45.8

GC content: 70.4

Gene sequence:

>1581_bases
ATGAAATGGAACGCCTGGGGGGATCCCGCCGCGGCCAAACCGCTCTCCGAGGGCATCCGGTCATTGCTGCAGCAGGCCGT
GGGGATCGAGGGGTCCCGCACGGCCGAGCCGCGACCCGAGCAGGTGCGGTTGCGTCCGTCCACGCTATCGCCGGCGGACC
GGGAGGCGCTGGCCGCCATCGTCGGCCCCGAGTACTGCCGCACCGCCGATTCCGATCGGTTGCTGCACGCGGGCGGCAAG
TCCACCATCGACCTGCTCAGCCGCAACGGCCCGGGCCCGCAGGATGCGCCCGACGCCGTGTTGCTGCCCGGCGACGACGA
GTCCGTCGCCGCGATTCTGCGCTACTGCTCCCAGCATCGGATCGCGGTCGTACCGTTCGGCGGGGGCACCAGCGTGGTCG
GCGGGCTCGCCCCCGAGCGCGCCGGGTTCGGCGCCGCCGTCGCGGTGGATCTACGCCGTTTCGATCAGCTGATCTCATTG
GACCCGGTGTCTGGGCTGGCGGTTCTCGGGGCCGGGGTCACCGGCCCGGATGCTGAGAAACTGCTTGGTGCACATGGCTT
TTCGCTTGGCCATTTTCCGCAGAGTTTCGAATACGCCACCATCGGTGGCTTCGCTGCAACCCGGTCCTCCGGGCAGGACT
CGGCGGGCTACGGCCGGTTCAACGACATGGTGCGCGGGCTGCGGGTGATCACCCCGGTGGGCACCATGGACCTGGGGCGC
GGACCGGAGTCGGCCGCCGGCCCGGACCTGCGTCAGCTGCTGATCGGCTCGGAGGGCACCCTGGGCGTCATCACCCGGGT
GCGGCTGCGGGTGCACCGCATTCCGCAGGCCGTTCGCTACGAGGCATGGTCGTTCCCCGACTTCGAAACCGGGGCGGCCG
CCCTGCGCGTGGTCACCCAGAATGGCACCGGCCCCACCGTGATTCGCCTCTCCGACGAGGCCGAGACCGGGGTCAACCTG
GCCACCACCGAGGCGATCGGCGAGTCCCGGATCACCGGCGGCTGCCTGTGCATCACCATGTTCGAGGGCACCGAACAACA
CGTCGACAGCCGGCACGCCGAAACCCGCGCGCTGCTGGCGGCCCAGGGCGGAACGTCGCTGGGGGACGGCCCGGCCCGGG
CCTGGGAGCGCGGCCGGTTCGGTGCGCCCTACCTGCGCGACTCACTGCTGGCGGCCGGGGCGCTGTGCGAAACACTGGAG
ACGGCCACCGACTGGTCCAACATCTCGGCGCTGAAAGCCGCTGTCACGCAAGCACTCACCACCGCGCTGGCGCAGACCGG
CACCCCGGCGCTGGTGATGTGCCACATTTCGCACGTCTACCCCACGGGCGCGTCGTTGTACTTCACCGTGGTCGCCGGGC
AACGCGGCGATCCGATCGAGCAGTGGAAAACCGCCAAGAAGGCCGCCTCGGATGCGATCATGGCCACCGGCGGGACCATC
ACCCACCACCACGCCGTCGGCACCGACCACCGGCCGTGGATGCGCGAGGAGGTCGGCGAGTTGGGAGTGCAGGTGTTACG
CGCGGTCAAGGCCACCCTGGACCCGGCCGGAATCCTCAACCCCGGCAAGCTGATTCCGTGA

Upstream 100 bases:

>100_bases
CGCTCGCCGGTGTCCAGCACGGCATCCGGCTTATCGTTACGGATTGACAGCATCTGTAATACTGTAACGCATGACGCATC
CGAAGCGGCTGCTGCCGCCG

Downstream 100 bases:

>100_bases
CGTCCCCGGCTGCACGGCTGCGCCGGTACGAGATCGGCAAGGTGATCGCGCTGACCAACCCGGTCTCCGGGCACGGCGCC
GCGGTGGCCGCCGCGCAGCG

Product: hypothetical protein

Products: alkyl-glycerone 3-phosphate; long-chain acid anion

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MKWNAWGDPAAAKPLSEGIRSLLQQAVGIEGSRTAEPRPEQVRLRPSTLSPADREALAAIVGPEYCRTADSDRLLHAGGK
STIDLLSRNGPGPQDAPDAVLLPGDDESVAAILRYCSQHRIAVVPFGGGTSVVGGLAPERAGFGAAVAVDLRRFDQLISL
DPVSGLAVLGAGVTGPDAEKLLGAHGFSLGHFPQSFEYATIGGFAATRSSGQDSAGYGRFNDMVRGLRVITPVGTMDLGR
GPESAAGPDLRQLLIGSEGTLGVITRVRLRVHRIPQAVRYEAWSFPDFETGAAALRVVTQNGTGPTVIRLSDEAETGVNL
ATTEAIGESRITGGCLCITMFEGTEQHVDSRHAETRALLAAQGGTSLGDGPARAWERGRFGAPYLRDSLLAAGALCETLE
TATDWSNISALKAAVTQALTTALAQTGTPALVMCHISHVYPTGASLYFTVVAGQRGDPIEQWKTAKKAASDAIMATGGTI
THHHAVGTDHRPWMREEVGELGVQVLRAVKATLDPAGILNPGKLIP

Sequences:

>Translated_526_residues
MKWNAWGDPAAAKPLSEGIRSLLQQAVGIEGSRTAEPRPEQVRLRPSTLSPADREALAAIVGPEYCRTADSDRLLHAGGK
STIDLLSRNGPGPQDAPDAVLLPGDDESVAAILRYCSQHRIAVVPFGGGTSVVGGLAPERAGFGAAVAVDLRRFDQLISL
DPVSGLAVLGAGVTGPDAEKLLGAHGFSLGHFPQSFEYATIGGFAATRSSGQDSAGYGRFNDMVRGLRVITPVGTMDLGR
GPESAAGPDLRQLLIGSEGTLGVITRVRLRVHRIPQAVRYEAWSFPDFETGAAALRVVTQNGTGPTVIRLSDEAETGVNL
ATTEAIGESRITGGCLCITMFEGTEQHVDSRHAETRALLAAQGGTSLGDGPARAWERGRFGAPYLRDSLLAAGALCETLE
TATDWSNISALKAAVTQALTTALAQTGTPALVMCHISHVYPTGASLYFTVVAGQRGDPIEQWKTAKKAASDAIMATGGTI
THHHAVGTDHRPWMREEVGELGVQVLRAVKATLDPAGILNPGKLIP
>Mature_526_residues
MKWNAWGDPAAAKPLSEGIRSLLQQAVGIEGSRTAEPRPEQVRLRPSTLSPADREALAAIVGPEYCRTADSDRLLHAGGK
STIDLLSRNGPGPQDAPDAVLLPGDDESVAAILRYCSQHRIAVVPFGGGTSVVGGLAPERAGFGAAVAVDLRRFDQLISL
DPVSGLAVLGAGVTGPDAEKLLGAHGFSLGHFPQSFEYATIGGFAATRSSGQDSAGYGRFNDMVRGLRVITPVGTMDLGR
GPESAAGPDLRQLLIGSEGTLGVITRVRLRVHRIPQAVRYEAWSFPDFETGAAALRVVTQNGTGPTVIRLSDEAETGVNL
ATTEAIGESRITGGCLCITMFEGTEQHVDSRHAETRALLAAQGGTSLGDGPARAWERGRFGAPYLRDSLLAAGALCETLE
TATDWSNISALKAAVTQALTTALAQTGTPALVMCHISHVYPTGASLYFTVVAGQRGDPIEQWKTAKKAASDAIMATGGTI
THHHAVGTDHRPWMREEVGELGVQVLRAVKATLDPAGILNPGKLIP

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=569, Percent_Identity=26.713532513181, Blast_Score=239, Evalue=5e-63,
Organism=Homo sapiens, GI37595756, Length=483, Percent_Identity=28.7784679089027, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI37595754, Length=506, Percent_Identity=27.8656126482213, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI119964728, Length=573, Percent_Identity=25.4799301919721, Blast_Score=92, Evalue=2e-18,
Organism=Escherichia coli, GI48994907, Length=457, Percent_Identity=29.5404814004376, Blast_Score=168, Evalue=8e-43,
Organism=Escherichia coli, GI1789351, Length=439, Percent_Identity=25.9681093394077, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1787977, Length=548, Percent_Identity=23.3576642335766, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17556096, Length=569, Percent_Identity=28.9982425307557, Blast_Score=244, Evalue=9e-65,
Organism=Caenorhabditis elegans, GI71992373, Length=491, Percent_Identity=27.6985743380855, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17534361, Length=217, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320027, Length=491, Percent_Identity=25.4582484725051, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6320764, Length=446, Percent_Identity=24.2152466367713, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6320023, Length=195, Percent_Identity=33.8461538461538, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24653753, Length=480, Percent_Identity=30.625, Blast_Score=243, Evalue=3e-64,
Organism=Drosophila melanogaster, GI18921117, Length=442, Percent_Identity=24.4343891402715, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24639277, Length=442, Percent_Identity=24.4343891402715, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24639275, Length=442, Percent_Identity=24.4343891402715, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: 2.5.1.26

Molecular weight: Translated: 55101; Mature: 55101

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWNAWGDPAAAKPLSEGIRSLLQQAVGIEGSRTAEPRPEQVRLRPSTLSPADREALAAI
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
VGPEYCRTADSDRLLHAGGKSTIDLLSRNGPGPQDAPDAVLLPGDDESVAAILRYCSQHR
HCHHHHCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
IAVVPFGGGTSVVGGLAPERAGFGAAVAVDLRRFDQLISLDPVSGLAVLGAGVTGPDAEK
EEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHEECCCCCCCHHH
LLGAHGFSLGHFPQSFEYATIGGFAATRSSGQDSAGYGRFNDMVRGLRVITPVGTMDLGR
HHHHCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCC
GPESAAGPDLRQLLIGSEGTLGVITRVRLRVHRIPQAVRYEAWSFPDFETGAAALRVVTQ
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEEEEE
NGTGPTVIRLSDEAETGVNLATTEAIGESRITGGCLCITMFEGTEQHVDSRHAETRALLA
CCCCCEEEEECCCCCCCCCEEEHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEE
AQGGTSLGDGPARAWERGRFGAPYLRDSLLAAGALCETLETATDWSNISALKAAVTQALT
ECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TALAQTGTPALVMCHISHVYPTGASLYFTVVAGQRGDPIEQWKTAKKAASDAIMATGGTI
HHHHHCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCEE
THHHAVGTDHRPWMREEVGELGVQVLRAVKATLDPAGILNPGKLIP
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKWNAWGDPAAAKPLSEGIRSLLQQAVGIEGSRTAEPRPEQVRLRPSTLSPADREALAAI
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
VGPEYCRTADSDRLLHAGGKSTIDLLSRNGPGPQDAPDAVLLPGDDESVAAILRYCSQHR
HCHHHHCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
IAVVPFGGGTSVVGGLAPERAGFGAAVAVDLRRFDQLISLDPVSGLAVLGAGVTGPDAEK
EEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHEECCCCCCCHHH
LLGAHGFSLGHFPQSFEYATIGGFAATRSSGQDSAGYGRFNDMVRGLRVITPVGTMDLGR
HHHHCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCC
GPESAAGPDLRQLLIGSEGTLGVITRVRLRVHRIPQAVRYEAWSFPDFETGAAALRVVTQ
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEEEEE
NGTGPTVIRLSDEAETGVNLATTEAIGESRITGGCLCITMFEGTEQHVDSRHAETRALLA
CCCCCEEEEECCCCCCCCCEEEHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEE
AQGGTSLGDGPARAWERGRFGAPYLRDSLLAAGALCETLETATDWSNISALKAAVTQALT
ECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TALAQTGTPALVMCHISHVYPTGASLYFTVVAGQRGDPIEQWKTAKKAASDAIMATGGTI
HHHHHCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCEE
THHHAVGTDHRPWMREEVGELGVQVLRAVKATLDPAGILNPGKLIP
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 1-acyl-glycerone 3-phosphate; long-chain alcohol

Specific reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = an alkyl-glycerone 3-phosphate + a long-chain acid anion

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]