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The map label for this gene is cobD

Identifier: 41408085

GI number: 41408085

Start: 2192493

End: 2193434

Strand: Reverse

Name: cobD

Synonym: MAP1987c

Alternate gene names: 41408085

Gene position: 2193434-2192493 (Counterclockwise)

Preceding gene: 41408087

Following gene: 41408081

Centisome position: 45.41

GC content: 77.92

Gene sequence:

>942_bases
TTGGCGACGCACCCCCTCGGCGTGCTGATCGGTTACCTGGCCGACCGCGCGCTGGGCGACCCGCGCCGGGGTCATCCGGT
GGCGCTGTTCGGCCGCGCCGTCGCCGGTCTGGAGAACCTCACCTACCGCGACGGCCGGGTCGCCGGCGCGCTGCACGTCG
GGGTGTCGATCGGGGCGGTGGGCCTGCTGGGGCTGGCCGTGCACCGGGCCGCCGCGCGCGCCGGTCCGCGCTGGTCGATC
GCGGCGACCGCCGCGGCCGGATGGGTCTGCTCGGGTGGAACCTCGCTGACCCGCACCGGGCTGGCCATGGCCGAGCTGCT
GCAGCGCGGCGACGTCGACGCCGCCCGTCGGCTGCTGCCGTCGCTGTGCGGGCGCGACCCGGCGGCGCTGGACGCCGCCG
GGCTGGCCCGGGCCGCGCTGGAATCGGTCGCGGAGAACACCTCCGACGCGCAGGTGGCGCCGCTGTTGTTGGCGGCGGCC
GGTGGGGTGCCTGCGGTGCTGGCGTATCGCGGCATCAACACGCTGGACGCGATGATCGGTCACCGCTCGCCGCGCTATCT
CCGATTCGGTTGGGCCGCAGCGAAATTGGACGACATCGCCAACTACCCGGCGGCGCGGGTGACCGCGTCGCTGACGGTGC
TGCTGGCGCCGGTGGCCGGCGGCTCCCCGTCGGGCGCGGCGCGGGCCTGGCGCCGCGACGCCGCCCGCCATCCCAGCCCC
AACGCCGGCGTGGTGGAGGCGGCGTTCGCCGGGGCGCTGGGCGTGCGGCTGGGCGGGCCCACCCAGTACGGGCACGAGCT
GCAGATCCGCCCGACCCTCGGCGCCGGTCGCGAGCCCACGGTGACCGACCTGCGCCGGGCGGTGCGGCTGTCGGCGGCGG
TGCAGGCCGCCGCCGTGGCCCTGGCGGCCGGGCTGCTGGCCGCCTACCGGCGGCGTCCGTAG

Upstream 100 bases:

>100_bases
CGCCGGATTCAGCAGGTCGGCGACCCGCTTCGCGGGCCGCTTCATTGCGGGCCCCGCCTCGTCGATTCCATGAACCCCAG
TATGAGACGCTGCGCAGGTG

Downstream 100 bases:

>100_bases
CGGTCGGCGAGCTTGTCCTGCACCGACTGCGGCGCTTCGGGTGCGGGTGCGGCCGGTTGCCTTTCCGCGCGGCGGGCCCG
CAGCTCGGAGTAGGCGAAAT

Product: cobalamin biosynthesis protein

Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MATHPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAVGLLGLAVHRAAARAGPRWSI
AATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLPSLCGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAA
GGVPAVLAYRGINTLDAMIGHRSPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSP
NAGVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVALAAGLLAAYRRRP

Sequences:

>Translated_313_residues
MATHPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAVGLLGLAVHRAAARAGPRWSI
AATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLPSLCGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAA
GGVPAVLAYRGINTLDAMIGHRSPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSP
NAGVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVALAAGLLAAYRRRP
>Mature_312_residues
ATHPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAVGLLGLAVHRAAARAGPRWSIA
ATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLPSLCGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAAG
GVPAVLAYRGINTLDAMIGHRSPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSPN
AGVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVALAAGLLAAYRRRP

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: 6.3.1.10

Molecular weight: Translated: 31880; Mature: 31749

Theoretical pI: Translated: 11.56; Mature: 11.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATHPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAV
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEHEEHHHHHHHH
GLLGLAVHRAAARAGPRWSIAATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLP
HHHHHHHHHHHHHCCCCCEEEHHHHCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
SLCGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAAGGVPAVLAYRGINTLDAMIG
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHC
HRSPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSP
CCCCCEEEECHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCC
NAGVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVA
CCCHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LAAGLLAAYRRRP
HHHHHHHHHHCCC
>Mature Secondary Structure 
ATHPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAV
CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEHEEHHHHHHHH
GLLGLAVHRAAARAGPRWSIAATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLP
HHHHHHHHHHHHHCCCCCEEEHHHHCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
SLCGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAAGGVPAVLAYRGINTLDAMIG
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHC
HRSPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSP
CCCCCEEEECHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCC
NAGVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVA
CCCHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LAAGLLAAYRRRP
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol

Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]