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The map label for this gene is eccD2 [H]

Identifier: 41406262

GI number: 41406262

Start: 165680

End: 167209

Strand: Direct

Name: eccD2 [H]

Synonym: MAP0164

Alternate gene names: 41406262

Gene position: 165680-167209 (Clockwise)

Preceding gene: 41406261

Following gene: 41406263

Centisome position: 3.43

GC content: 70.13

Gene sequence:

>1530_bases
GTGACATCGCCGCATAAGGTCGCCTTTCCGGCGCGTTGTGCGGTCAACATTTCTTACGAGAAGCACCTGTGTTCCCAAGT
CTTTCCGGCCGGAATTCCGGTGGAGGGATTCTTCGAGGGAATGGTCGAGCTCTTCGACGCCGACCTGAAGCGCAAAGGTT
TCGACGGCATTGCTTTGCCGGCCGGCAGCTACGAACTGCACAAGATCAATGGGGTTCGGCTCGATATCAATAAGAGCCTG
GACGAGCTGGGCGTCCAGGACGGCGACACCCTGGTGCTGGTGCCGCGGGTGGACGGCGAGTCGTTCGAACCGCAGTACGA
GTCGCTGTCCAGCGGGTTGGCCGCCATGGGCAAGTGGCTGGGCCGCGAGGGCGGTGACCGGATGTTCGCTCCGGTGACGC
CGCTGACCGCCGCGCACACCGCGGTCGCGGTGATCGCGATGGCGGTGGCGGTGGTGGTGGGGCTGTGCCTGCGGGCGCGG
ACCTTCACCGACGGCCCGATCCCCGCGGCGGTGGCCGGCGGCATCGGTGCGCTGCTGCTGATCGCGACGTTGGTGGTGCG
CAGCGGGTGGCGCGAGCGCCGCGACCTGTTCAGCGGGTTCGCCTGGCTGGCGGTGGTGGCGCTGGCCGTAGCCGGCGCCT
GCGCCCCGCCCGGCGTGCTGGGCGCCGCGCACGCGCTGATCGGGGTCGTGGTGGTGATCCTGGGGGCCATCGCGATCGGG
GTGACGGCACGCAACCGGTGGCAGACCGCGGTGGTCACCGCGGTGGTGACGGTGTGCGGGGTGCTGGCCGCGGTCGCCGC
GGTCCGGATGTTCCGTCCCGCCTCGGTGCAGGTGCTGGCGATCTGTGTGCTGGTGGGATTGCTTGTGCTGGTTCGGATGA
CGCCGCTGATCGCGCTGTGGGTGGCCCGGGTCCGGCCGCCGCACTTCGGCTCGATCACCGGCCGCGACCTGTTCGCCCGG
CGCGAGGGCATGCCGGTCGACACCGTGGCCCCGGTCAGCGAGGACGAATCCGAGGAGCAGGACAACGAATTGACCGACAT
CACCGCGCGCGGCGCCGCGATCGCCGCCTCGGCGCGGTTGGTCAACGCGGTCCAGGTGGGGCTGTGCGTCGGGGTGTCGA
TCGTGCTGCCCGCCGCGGTGTGGGGCGTTTTGACGCCCGGACGGCCGTGGGCGTGGCTGGCGCTGGTGGTCGCCGGGCTG
GTGGTGGGCATCTTCATCACCCAGGGCCGCGGCTTCGCCGCCAAGTACCAGGCCGTCGCCCTGGTGTGCGGGGCGTCGGC
CGCGGTGTGCACGGGAGTGGTCAAATTCGCGCTCGCCGCGCCGCACGATGCGATGACCGGGCTGCTGTGGCCGGTGGTGG
CGGTGGCCACCTTCGCCGCATTCGGTTTGGCCGCAGCGCTTTTGGTGCCGACGATGCGGTTCCGGCCGTTCATCCGGTTG
ACCGTGGAATGGGTGGAAGTGCTCGCGTTCATCGTCCTGCTGCCGGCGGCGGCGGCCCTGGGAGGGCTCTTCACGTGGAT
TCGCCACTGA

Upstream 100 bases:

>100_bases
ACACCGTCCACGAGCTGAAGAAAAAGACGCGGCTGCGGCTTTTCGAGATCACCGCCGGACTGGCCGACAAATACATTCCT
GATGCCGAGCGGGCGGTGCC

Downstream 100 bases:

>100_bases
GACGGGCGGCGGCGCTGGTCGCCGCCCTGACCCTGGTCGCATTATCAGCCAATGTTACTGTCGCACAAGCGATTACACCC
CCCTCGGTGGATCCGGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D2; Type VII secretion system protein eccD2; T7SS protein eccD2 [H]

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MTSPHKVAFPARCAVNISYEKHLCSQVFPAGIPVEGFFEGMVELFDADLKRKGFDGIALPAGSYELHKINGVRLDINKSL
DELGVQDGDTLVLVPRVDGESFEPQYESLSSGLAAMGKWLGREGGDRMFAPVTPLTAAHTAVAVIAMAVAVVVGLCLRAR
TFTDGPIPAAVAGGIGALLLIATLVVRSGWRERRDLFSGFAWLAVVALAVAGACAPPGVLGAAHALIGVVVVILGAIAIG
VTARNRWQTAVVTAVVTVCGVLAAVAAVRMFRPASVQVLAICVLVGLLVLVRMTPLIALWVARVRPPHFGSITGRDLFAR
REGMPVDTVAPVSEDESEEQDNELTDITARGAAIAASARLVNAVQVGLCVGVSIVLPAAVWGVLTPGRPWAWLALVVAGL
VVGIFITQGRGFAAKYQAVALVCGASAAVCTGVVKFALAAPHDAMTGLLWPVVAVATFAAFGLAAALLVPTMRFRPFIRL
TVEWVEVLAFIVLLPAAAALGGLFTWIRH

Sequences:

>Translated_509_residues
MTSPHKVAFPARCAVNISYEKHLCSQVFPAGIPVEGFFEGMVELFDADLKRKGFDGIALPAGSYELHKINGVRLDINKSL
DELGVQDGDTLVLVPRVDGESFEPQYESLSSGLAAMGKWLGREGGDRMFAPVTPLTAAHTAVAVIAMAVAVVVGLCLRAR
TFTDGPIPAAVAGGIGALLLIATLVVRSGWRERRDLFSGFAWLAVVALAVAGACAPPGVLGAAHALIGVVVVILGAIAIG
VTARNRWQTAVVTAVVTVCGVLAAVAAVRMFRPASVQVLAICVLVGLLVLVRMTPLIALWVARVRPPHFGSITGRDLFAR
REGMPVDTVAPVSEDESEEQDNELTDITARGAAIAASARLVNAVQVGLCVGVSIVLPAAVWGVLTPGRPWAWLALVVAGL
VVGIFITQGRGFAAKYQAVALVCGASAAVCTGVVKFALAAPHDAMTGLLWPVVAVATFAAFGLAAALLVPTMRFRPFIRL
TVEWVEVLAFIVLLPAAAALGGLFTWIRH
>Mature_508_residues
TSPHKVAFPARCAVNISYEKHLCSQVFPAGIPVEGFFEGMVELFDADLKRKGFDGIALPAGSYELHKINGVRLDINKSLD
ELGVQDGDTLVLVPRVDGESFEPQYESLSSGLAAMGKWLGREGGDRMFAPVTPLTAAHTAVAVIAMAVAVVVGLCLRART
FTDGPIPAAVAGGIGALLLIATLVVRSGWRERRDLFSGFAWLAVVALAVAGACAPPGVLGAAHALIGVVVVILGAIAIGV
TARNRWQTAVVTAVVTVCGVLAAVAAVRMFRPASVQVLAICVLVGLLVLVRMTPLIALWVARVRPPHFGSITGRDLFARR
EGMPVDTVAPVSEDESEEQDNELTDITARGAAIAASARLVNAVQVGLCVGVSIVLPAAVWGVLTPGRPWAWLALVVAGLV
VGIFITQGRGFAAKYQAVALVCGASAAVCTGVVKFALAAPHDAMTGLLWPVVAVATFAAFGLAAALLVPTMRFRPFIRLT
VEWVEVLAFIVLLPAAAALGGLFTWIRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 53173; Mature: 53042

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPHKVAFPARCAVNISYEKHLCSQVFPAGIPVEGFFEGMVELFDADLKRKGFDGIALP
CCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC
AGSYELHKINGVRLDINKSLDELGVQDGDTLVLVPRVDGESFEPQYESLSSGLAAMGKWL
CCCCEEEEECCEEEECCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
GREGGDRMFAPVTPLTAAHTAVAVIAMAVAVVVGLCLRARTFTDGPIPAAVAGGIGALLL
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
IATLVVRSGWRERRDLFSGFAWLAVVALAVAGACAPPGVLGAAHALIGVVVVILGAIAIG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VTARNRWQTAVVTAVVTVCGVLAAVAAVRMFRPASVQVLAICVLVGLLVLVRMTPLIALW
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VARVRPPHFGSITGRDLFARREGMPVDTVAPVSEDESEEQDNELTDITARGAAIAASARL
HHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHH
VNAVQVGLCVGVSIVLPAAVWGVLTPGRPWAWLALVVAGLVVGIFITQGRGFAAKYQAVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LVCGASAAVCTGVVKFALAAPHDAMTGLLWPVVAVATFAAFGLAAALLVPTMRFRPFIRL
HHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
TVEWVEVLAFIVLLPAAAALGGLFTWIRH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSPHKVAFPARCAVNISYEKHLCSQVFPAGIPVEGFFEGMVELFDADLKRKGFDGIALP
CCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC
AGSYELHKINGVRLDINKSLDELGVQDGDTLVLVPRVDGESFEPQYESLSSGLAAMGKWL
CCCCEEEEECCEEEECCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
GREGGDRMFAPVTPLTAAHTAVAVIAMAVAVVVGLCLRARTFTDGPIPAAVAGGIGALLL
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
IATLVVRSGWRERRDLFSGFAWLAVVALAVAGACAPPGVLGAAHALIGVVVVILGAIAIG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VTARNRWQTAVVTAVVTVCGVLAAVAAVRMFRPASVQVLAICVLVGLLVLVRMTPLIALW
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VARVRPPHFGSITGRDLFARREGMPVDTVAPVSEDESEEQDNELTDITARGAAIAASARL
HHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHH
VNAVQVGLCVGVSIVLPAAVWGVLTPGRPWAWLALVVAGLVVGIFITQGRGFAAKYQAVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LVCGASAAVCTGVVKFALAAPHDAMTGLLWPVVAVATFAAFGLAAALLVPTMRFRPFIRL
HHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
TVEWVEVLAFIVLLPAAAALGGLFTWIRH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]