| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is dnaB
Identifier: 41406169
GI number: 41406169
Start: 76950
End: 79577
Strand: Direct
Name: dnaB
Synonym: MAP0071
Alternate gene names: 41406169
Gene position: 76950-79577 (Clockwise)
Preceding gene: 41406168
Following gene: 41406172
Centisome position: 1.59
GC content: 65.49
Gene sequence:
>2628_bases GTGGCGGTCGTCGATGACTTGACGTCGGGCATGGATTCGTCGTCGCCCAGTGAGGATTTCGGGCGACAGCCACCGCAGGA CCTGGCGGCCGAGCAGGCCGTGCTGGGCGGCATGCTGCTGAGCAAGGACGCCATCGCCGACGTGTTGGAACGGCTGCGGC CCGGCGACTTCTACCGTCCCGCGCACCAGAACGTCTACGACGCGATCCTGGACCTGTACGGGCGGGGTGAGCCGGCCGAT GCCGTGACCGTCGCCGCGGAGCTGGACCGCCGTAATCTGCTGCGCCGCATCGGCGGTGCGCCGTATCTGCACACGCTGAT CTCGACGGTGCCGACCGCGGCGAACGCGGGCTACTACGCGACCATCGTGGCCGAGAAGGCGCTGTTGCGCCGCCTGGTGG AGGCCGGCACCCGTGTGGTGCAGTACGGCTACGCGGGCGCCGAGGGCGCCGATGTGGCCGAGGTGGTCGATCGCGCCCAG GCCGAGATCTACGAGGTGGCCGAGCGCCGGACCACGGAGGATTTCGTTCCGCTCGAGGATCTGCTGCAGCCGACGATGGA CGAGATCGACGCCATCGCCTCCAACGGCGGTGTGGCGCGCGGCGTGCCGACCGGTTTCACCGAACTCGACGAGGTGACCA ACGGCCTGCACGCCGGTCAGATGATCATCGTGGCGGCCAGGCCTGGAGTGGGCAAGGCGCTGGCGTTGGATACGCCGCTG CCGACGCCGACCGGGTGGACGACGATGGGCGATGTCGCGGTCGGTGACGAGTTGCTCGGCGACGACGGGCGGCCGACGCG GGTGGTAGCGGCCACCGACGTGATGCTGGGACGGCCATGCTACGAGGTCGAGTTCTCTGATGGGACCGTGATCGTCGCCG ACGCTGCGCATCAGTGGCTGACCGAAACACGCGCATCCCGAAAGTCGGCGCAGGCAGCGGCCGTTGGCTACAACCGGCAC AAGAATCAGCGCACCTTTGCGGCGGTGCGAACGACTGCCGAGATCGCCGAAACCCTGCGCTGCCCCACCCAAGACCGGCG GTTGAACCACAGCGTGGTCAATGCGCGCGCGCTCGAGCTCCCGGACCGCGAATTCCTGGTGCCCCCTTACACACTCGGCG CCTGGCTCGGGGATGGCACCAGCGCCGCCGCGCAGATCACCGCTGCCGATCCTGAAATCATCATGCGGATTGAAGCGGAC GGCGTCGTCGCGGTCCCGTCGGGATCCGCCCCGTACCGTTACCAATTGCGTTTACCTCCGGGTGCTGAGCAAGCACCGCG GCGGTGCGTGGTGTGTGGCAAGTCGTTTATTCCCCAAACCAGCCAGGTGCGGACCTGTGGGCGTTCGTGCGGCGGTCGCG CGCGCTTCATGTCCGACCCGGTGCCGAGCCCGACCTGCGTTCGCTGTGGCGGACCGTCGGCAGGAATGCGGTTGTGCCTG AAGTGCCACTCCACCGTGGGGACGTTGCAGGCGCGGTTGCGCACCATCGGCGTGCTCGGCAACAAGCACATTCCGACGGA ATACCTGCGGGGGTCCGAGGCGCAGCGGCGTGCCTTGCTCGCCGGCTTGCTCGACACCGACGGAACCGTGACGGTCGGCG GTGCCGTCCAATTTTCGGTTACCAACCAACGGCTGGCGCGTGATGTCAACGAGCTTATTGTCAGCCTCGGCTATCGCTGC CAAACCTCGACCAAACGTGTCCAGGGCCGCTCCGAAACGTCGAGCATCGCCTACACCCTGACCTTTTCCACCGAAGATAA AGTGTTCGCGTTGGAGCGAAAGGCCATCGCGCACAAGGAGCGCCGGGCCGTAACAGGCACCTCACGCTGTGGGTCGCGCT TCATCGTGGACGTCCGCCCGATCGAGTCGGTGGCCGTGCGCTGCGTCGAGGTGGACAACGACAGCCACATGTATCTGGCG AGCAGGGCGATGGTGCCCACACATAACTCCACCCTCGGTCTCGACTTCTTGCGATCGTGTTCGATCAAGCACCGGATGGC CAGCGTCATCTTCTCGCTGGAAATGAGCAAGTCCGAGATCGTGATGCGGCTGTTGTCGGCGGAGGCGAAAATCAAACTCT CCGATATGCGTTCGGGTCGCATGAGCGACGAGGACTGGACGCGGTTGGCGCGGCGGATGAGCGAAATCAGCGAGGCGCCA CTGTATATCGACGATTCGCCGAACTTGACGATGATGGAGATCCGCGCCAAGGCGCGCCGGCTCCGGCAGAAAGCCGATCT GCGGCTGGTGGTGGTCGATTACCTGCAGCTGATGTCGTCAGGAAAGAAAGTCGAGTCCCGGCAGCTCGAGGTCTCCGAAT TCTCCCGTCAGCTCAAGCTTTTGGCCAAGGAACTCGAGGTTCCCGTCGTGGCAATCAGCCAGCTGAACCGCGGTCCCGAG CAGCGCACCGACAAGAAGCCGATGCTGTCCGACCTTCGCGAGTCGGGATCGCTGGAGCAGGATGCGGACATGGTGATCCT GCTGAATCGGCCCGACGCGTTCGAGCGGGACGATCCGCGTGGGGGAGAGGCGGATTTCATTCTGGCCAAACACCGTAACG GTCCGACCAAGACAGTGACCGTTGCGCATCAGCTGCATCTGTCGCGCTTCGCCAACATGGCGCGCTGA
Upstream 100 bases:
>100_bases GCGGGTGCGATACGGCCAAGATGTCAGCACCTTGACCTACGCTCAATGTCAACTGTCGAATGTATGTTCGGATTGCGTGG ATCAGGGGAGGAGGGAATCC
Downstream 100 bases:
>100_bases CGTAGATTCTCAAACTCCGTGTCCAATTCTCAGACGAAATGTCCACTCGATGTCCCATTGCACATCCCGAATGAGACGAC CCGAGAGCTGCTGCCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 875; Mature: 874
Protein sequence:
>875_residues MAVVDDLTSGMDSSSPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPAD AVTVAAELDRRNLLRRIGGAPYLHTLISTVPTAANAGYYATIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQ AEIYEVAERRTTEDFVPLEDLLQPTMDEIDAIASNGGVARGVPTGFTELDEVTNGLHAGQMIIVAARPGVGKALALDTPL PTPTGWTTMGDVAVGDELLGDDGRPTRVVAATDVMLGRPCYEVEFSDGTVIVADAAHQWLTETRASRKSAQAAAVGYNRH KNQRTFAAVRTTAEIAETLRCPTQDRRLNHSVVNARALELPDREFLVPPYTLGAWLGDGTSAAAQITAADPEIIMRIEAD GVVAVPSGSAPYRYQLRLPPGAEQAPRRCVVCGKSFIPQTSQVRTCGRSCGGRARFMSDPVPSPTCVRCGGPSAGMRLCL KCHSTVGTLQARLRTIGVLGNKHIPTEYLRGSEAQRRALLAGLLDTDGTVTVGGAVQFSVTNQRLARDVNELIVSLGYRC QTSTKRVQGRSETSSIAYTLTFSTEDKVFALERKAIAHKERRAVTGTSRCGSRFIVDVRPIESVAVRCVEVDNDSHMYLA SRAMVPTHNSTLGLDFLRSCSIKHRMASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSGRMSDEDWTRLARRMSEISEAP LYIDDSPNLTMMEIRAKARRLRQKADLRLVVVDYLQLMSSGKKVESRQLEVSEFSRQLKLLAKELEVPVVAISQLNRGPE QRTDKKPMLSDLRESGSLEQDADMVILLNRPDAFERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANMAR
Sequences:
>Translated_875_residues MAVVDDLTSGMDSSSPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPAD AVTVAAELDRRNLLRRIGGAPYLHTLISTVPTAANAGYYATIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQ AEIYEVAERRTTEDFVPLEDLLQPTMDEIDAIASNGGVARGVPTGFTELDEVTNGLHAGQMIIVAARPGVGKALALDTPL PTPTGWTTMGDVAVGDELLGDDGRPTRVVAATDVMLGRPCYEVEFSDGTVIVADAAHQWLTETRASRKSAQAAAVGYNRH KNQRTFAAVRTTAEIAETLRCPTQDRRLNHSVVNARALELPDREFLVPPYTLGAWLGDGTSAAAQITAADPEIIMRIEAD GVVAVPSGSAPYRYQLRLPPGAEQAPRRCVVCGKSFIPQTSQVRTCGRSCGGRARFMSDPVPSPTCVRCGGPSAGMRLCL KCHSTVGTLQARLRTIGVLGNKHIPTEYLRGSEAQRRALLAGLLDTDGTVTVGGAVQFSVTNQRLARDVNELIVSLGYRC QTSTKRVQGRSETSSIAYTLTFSTEDKVFALERKAIAHKERRAVTGTSRCGSRFIVDVRPIESVAVRCVEVDNDSHMYLA SRAMVPTHNSTLGLDFLRSCSIKHRMASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSGRMSDEDWTRLARRMSEISEAP LYIDDSPNLTMMEIRAKARRLRQKADLRLVVVDYLQLMSSGKKVESRQLEVSEFSRQLKLLAKELEVPVVAISQLNRGPE QRTDKKPMLSDLRESGSLEQDADMVILLNRPDAFERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANMAR >Mature_874_residues AVVDDLTSGMDSSSPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADA VTVAAELDRRNLLRRIGGAPYLHTLISTVPTAANAGYYATIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQA EIYEVAERRTTEDFVPLEDLLQPTMDEIDAIASNGGVARGVPTGFTELDEVTNGLHAGQMIIVAARPGVGKALALDTPLP TPTGWTTMGDVAVGDELLGDDGRPTRVVAATDVMLGRPCYEVEFSDGTVIVADAAHQWLTETRASRKSAQAAAVGYNRHK NQRTFAAVRTTAEIAETLRCPTQDRRLNHSVVNARALELPDREFLVPPYTLGAWLGDGTSAAAQITAADPEIIMRIEADG VVAVPSGSAPYRYQLRLPPGAEQAPRRCVVCGKSFIPQTSQVRTCGRSCGGRARFMSDPVPSPTCVRCGGPSAGMRLCLK CHSTVGTLQARLRTIGVLGNKHIPTEYLRGSEAQRRALLAGLLDTDGTVTVGGAVQFSVTNQRLARDVNELIVSLGYRCQ TSTKRVQGRSETSSIAYTLTFSTEDKVFALERKAIAHKERRAVTGTSRCGSRFIVDVRPIESVAVRCVEVDNDSHMYLAS RAMVPTHNSTLGLDFLRSCSIKHRMASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSGRMSDEDWTRLARRMSEISEAPL YIDDSPNLTMMEIRAKARRLRQKADLRLVVVDYLQLMSSGKKVESRQLEVSEFSRQLKLLAKELEVPVVAISQLNRGPEQ RTDKKPMLSDLRESGSLEQDADMVILLNRPDAFERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANMAR
Specific function: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity [H]
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=227, Percent_Identity=43.1718061674009, Blast_Score=190, Evalue=3e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007694 - InterPro: IPR006142 - InterPro: IPR004042 - InterPro: IPR006141 [H]
Pfam domain/function: PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 95498; Mature: 95367
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: PS50819 INTEIN_ENDONUCLEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVVDDLTSGMDSSSPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRP CCCHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AHQNVYDAILDLYGRGEPADAVTVAAELDRRNLLRRIGGAPYLHTLISTVPTAANAGYYA HHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEE TIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERRTTEDFVPLED HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LLQPTMDEIDAIASNGGVARGVPTGFTELDEVTNGLHAGQMIIVAARPGVGKALALDTPL HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCC PTPTGWTTMGDVAVGDELLGDDGRPTRVVAATDVMLGRPCYEVEFSDGTVIVADAAHQWL CCCCCCCCCCCHHHCHHHHCCCCCCEEEEEEEHHHHCCCEEEEEECCCEEEEECCHHHHH TETRASRKSAQAAAVGYNRHKNQRTFAAVRTTAEIAETLRCPTQDRRLNHSVVNARALEL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCEEECC PDREFLVPPYTLGAWLGDGTSAAAQITAADPEIIMRIEADGVVAVPSGSAPYRYQLRLPP CCCCEECCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCEEEEEECCC GAEQAPRRCVVCGKSFIPQTSQVRTCGRSCGGRARFMSDPVPSPTCVRCGGPSAGMRLCL CCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH KCHSTVGTLQARLRTIGVLGNKHIPTEYLRGSEAQRRALLAGLLDTDGTVTVGGAVQFSV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEECCEEEEEE TNQRLARDVNELIVSLGYRCQTSTKRVQGRSETSSIAYTLTFSTEDKVFALERKAIAHKE CHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHHH RRAVTGTSRCGSRFIVDVRPIESVAVRCVEVDNDSHMYLASRAMVPTHNSTLGLDFLRSC HHCCCCCCCCCCEEEEEECCHHHEEEEEEEECCCCEEEEEECEECCCCCCCCCHHHHHHH SIKHRMASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSGRMSDEDWTRLARRMSEISEAP HHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC LYIDDSPNLTMMEIRAKARRLRQKADLRLVVVDYLQLMSSGKKVESRQLEVSEFSRQLKL EEECCCCCEEHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHH LAKELEVPVVAISQLNRGPEQRTDKKPMLSDLRESGSLEQDADMVILLNRPDAFERDDPR HHHHHCCCHHHHHHHCCCCHHCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC GGEADFILAKHRNGPTKTVTVAHQLHLSRFANMAR CCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHCC >Mature Secondary Structure AVVDDLTSGMDSSSPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRP CCHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AHQNVYDAILDLYGRGEPADAVTVAAELDRRNLLRRIGGAPYLHTLISTVPTAANAGYYA HHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEE TIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERRTTEDFVPLED HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LLQPTMDEIDAIASNGGVARGVPTGFTELDEVTNGLHAGQMIIVAARPGVGKALALDTPL HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCC PTPTGWTTMGDVAVGDELLGDDGRPTRVVAATDVMLGRPCYEVEFSDGTVIVADAAHQWL CCCCCCCCCCCHHHCHHHHCCCCCCEEEEEEEHHHHCCCEEEEEECCCEEEEECCHHHHH TETRASRKSAQAAAVGYNRHKNQRTFAAVRTTAEIAETLRCPTQDRRLNHSVVNARALEL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCEEECC PDREFLVPPYTLGAWLGDGTSAAAQITAADPEIIMRIEADGVVAVPSGSAPYRYQLRLPP CCCCEECCCHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCEEEEEECCC GAEQAPRRCVVCGKSFIPQTSQVRTCGRSCGGRARFMSDPVPSPTCVRCGGPSAGMRLCL CCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH KCHSTVGTLQARLRTIGVLGNKHIPTEYLRGSEAQRRALLAGLLDTDGTVTVGGAVQFSV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEECCEEEEEE TNQRLARDVNELIVSLGYRCQTSTKRVQGRSETSSIAYTLTFSTEDKVFALERKAIAHKE CHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHHH RRAVTGTSRCGSRFIVDVRPIESVAVRCVEVDNDSHMYLASRAMVPTHNSTLGLDFLRSC HHCCCCCCCCCCEEEEEECCHHHEEEEEEEECCCCEEEEEECEECCCCCCCCCHHHHHHH SIKHRMASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSGRMSDEDWTRLARRMSEISEAP HHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC LYIDDSPNLTMMEIRAKARRLRQKADLRLVVVDYLQLMSSGKKVESRQLEVSEFSRQLKL EEECCCCCEEHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHH LAKELEVPVVAISQLNRGPEQRTDKKPMLSDLRESGSLEQDADMVILLNRPDAFERDDPR HHHHHCCCHHHHHHHCCCCHHCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC GGEADFILAKHRNGPTKTVTVAHQLHLSRFANMAR CCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA