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The map label for this gene is ydcN [C]

Identifier: 41406133

GI number: 41406133

Start: 41395

End: 42183

Strand: Direct

Name: ydcN [C]

Synonym: MAP0035

Alternate gene names: 41406133

Gene position: 41395-42183 (Clockwise)

Preceding gene: 41406132

Following gene: 41406134

Centisome position: 0.86

GC content: 68.19

Gene sequence:

>789_bases
GTGAGCCGTGAATCGGCCGGCGCAGCGATCCGCGCGTTGAGAGAATCGCGGGATTGGTCGCTGGCCGACCTTGCCGCCGC
GACCGGTGTCAGCATCATGGGCCTGAGCTACCTCGAGCGCGGCGCCCGTAAACCGCACAAAAGCACAGTTCAGAAGATCG
AAAACGGGCTCGGGCTGCCGCCGGGCACGTATTCGCGGCTGTTGGTGGCCGCCGACCCGGAGGCCGAGCTGGCCCGCCTG
ATGGCCGCTCAGCCGGCGGCCGAGATGCCGGCGCGGCGCACCGGACCGGTGGTGGTCGATCGTCACAGTGACACCGAAGT
GCTGGAGGGCTACGCCGAAGCGCAGCTGGATGCCCTCAAATCGGCCATCGATCGATTGCCGGCGACAACATCAAACGAAT
ATGAGACGTATATTCTGTCTGTGATCGCTCAGTGCGTGAAGGCGGAGCTGCTCGCCGCCAGCTCATGGAGGGTGGCGGTG
AACGCCGGCGCCGACTCGACCGGGCGGCTGATGGAACACCTGCAGGCCCTGGAGGCGACGCGGGTGGCCCTGTTGAAGCG
GATGCCCACCAGCCTCAGCGCGCGCTTCGACCGGGCCTGCGCCCAGTCGTCACTGCCGGAGACCATCATCGCTGCCCTGG
TCGGGGTGGATGTCGACGAGATGTGGGACATCCGGAACCGGGGGGTCATCTCGCCGAGCGCCCTCCCCCGGGTGCGTGCC
TTCACCGACGCGGTCGAGTCGGCGAGCCGGAATGGGGCGAGCCGGGGCGACGACGAGGAGGGGTCGTGA

Upstream 100 bases:

>100_bases
ATCTCTAACCGAAGGCGCGCAAGAGAAACGTGACGAAAACGTATACACAGAGGTTTGAGGCCTCAGCTGTGTAATATCCG
GCCTATGGCCGGAGCGTGCG

Downstream 100 bases:

>100_bases
GCCACAGCGAACTCGAGGCGTTGAGCCGTGCTCATCAACTTTTCGCCGGCGGCACGCGGCCCGCATCCCTGGACACCGGA
AGTGGGCACTACCGCGACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLPPGTYSRLLVAADPEAELARL
MAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALKSAIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAV
NAGADSTGRLMEHLQALEATRVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRA
FTDAVESASRNGASRGDDEEGS

Sequences:

>Translated_262_residues
MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLPPGTYSRLLVAADPEAELARL
MAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALKSAIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAV
NAGADSTGRLMEHLQALEATRVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRA
FTDAVESASRNGASRGDDEEGS
>Mature_261_residues
SRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLPPGTYSRLLVAADPEAELARLM
AAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALKSAIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAVN
AGADSTGRLMEHLQALEATRVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRAF
TDAVESASRNGASRGDDEEGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 27986; Mature: 27855

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLP
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
PGTYSRLLVAADPEAELARLMAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK
CCCHHEEEEECCCHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
SAIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAVNAGADSTGRLMEHLQALEAT
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
RVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRA
HHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
FTDAVESASRNGASRGDDEEGS
HHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SRESAGAAIRALRESRDWSLADLAAATGVSIMGLSYLERGARKPHKSTVQKIENGLGLP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
PGTYSRLLVAADPEAELARLMAAQPAAEMPARRTGPVVVDRHSDTEVLEGYAEAQLDALK
CCCHHEEEEECCCHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
SAIDRLPATTSNEYETYILSVIAQCVKAELLAASSWRVAVNAGADSTGRLMEHLQALEAT
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
RVALLKRMPTSLSARFDRACAQSSLPETIIAALVGVDVDEMWDIRNRGVISPSALPRVRA
HHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
FTDAVESASRNGASRGDDEEGS
HHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]