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The map label for this gene is ybbK [C]

Identifier: 52843151

GI number: 52843151

Start: 3345538

End: 3346317

Strand: Reverse

Name: ybbK [C]

Synonym: lpg2957

Alternate gene names: 52843151

Gene position: 3346317-3345538 (Counterclockwise)

Preceding gene: 52843152

Following gene: 52843150

Centisome position: 98.49

GC content: 41.92

Gene sequence:

>780_bases
ATGAAAGGGATTAAGGAGAATGAGATGGGACCATTTCTGGTTATATTACTGGTAGCGATAGGCTTGCTACTGGCTTCAAT
GTTCAAGGTATTTCGGGAATATGAGCGTGGGGTGGTTTTTATGCTGGGTCGGTTTTGGCGCGTTAAAGGTCCGGGATTGA
TAATCATTATCCCAATTATTCAACAAGTGGTACGTGTTGATTTGCGAACCATAGTCATGGATGTACCCAGTCAAGATGTT
ATCTCAAGAGATAACGTTTCTGTACGCGTCAATGCTGTGGTGTATTTTCGCGTTGTTGTTCCTGAAAATGCAATCATCCA
GGTAGAAAATTATTTTGAAGCAACCAGCCAATTGGCGCAAACCACATTGCGATCAGTATTAGGTCAACATGATTTGGATG
ATATGTTGGCTGAACGTGAGCAACTGAATAGTGATGTGCAAAAAATTCTTGATGCCCAAACAGAAAGCTGGGGAATCAAA
GTTTCAAATGTTGAAATCAAGAAGGTGGATTTGGATGAAAGTATGATAAGGGCAATAGCCAAACAGGCTGAAGCGGAAAG
AGACAGGAGAGCGAAAGTCATCCATGCGGAGGGAGAGCTGCAAGCTTCGGAAAAGTTATTACAAGCCTCTCAAGTACTAG
CCCAGCAACCCCAGGCAATGCAGCTAAGATATTTGCAAACTTTAGCCACTATAGCGGTTAATAACAATTCAACGATAATT
TTCCCTATGCCAATGGAGATAGGTGATATATTAACTTCCATGGCCGGCAAGAAAAAATAG

Upstream 100 bases:

>100_bases
CATTGCGGCAAATAAAAGTGTTAAAGTCACGCGAGCATCAGGATTATTGTTGGAAGTGGAGGAAGATCAGTCGGTTTATT
AGTTGGTTATTCCATGTTGA

Downstream 100 bases:

>100_bases
ACCTTGAACAGTGGCATAAGCCCCAAATATACCTAAGTGTATAGAGTGCTGCCATTGGATATGAGAATATGGTGATGAGT
TTTTTTATTCCACAACAGGT

Product: stomatin like transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKGIKENEMGPFLVILLVAIGLLLASMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPIIQQVVRVDLRTIVMDVPSQDV
ISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIK
VSNVEIKKVDLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTII
FPMPMEIGDILTSMAGKKK

Sequences:

>Translated_259_residues
MKGIKENEMGPFLVILLVAIGLLLASMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPIIQQVVRVDLRTIVMDVPSQDV
ISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIK
VSNVEIKKVDLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTII
FPMPMEIGDILTSMAGKKK
>Mature_259_residues
MKGIKENEMGPFLVILLVAIGLLLASMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPIIQQVVRVDLRTIVMDVPSQDV
ISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQTTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIK
VSNVEIKKVDLDESMIRAIAKQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTII
FPMPMEIGDILTSMAGKKK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=238, Percent_Identity=48.3193277310924, Blast_Score=211, Evalue=4e-55,
Organism=Homo sapiens, GI21686995, Length=238, Percent_Identity=48.3193277310924, Blast_Score=211, Evalue=5e-55,
Organism=Homo sapiens, GI38016911, Length=232, Percent_Identity=47.8448275862069, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI7657615, Length=269, Percent_Identity=32.7137546468402, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI7305503, Length=188, Percent_Identity=35.6382978723404, Blast_Score=120, Evalue=8e-28,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=31.2101910828025, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI38016907, Length=68, Percent_Identity=54.4117647058823, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786697, Length=192, Percent_Identity=34.375, Blast_Score=124, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17569493, Length=240, Percent_Identity=47.5, Blast_Score=214, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=47.5, Blast_Score=214, Evalue=4e-56,
Organism=Caenorhabditis elegans, GI17569497, Length=243, Percent_Identity=42.798353909465, Blast_Score=200, Evalue=7e-52,
Organism=Caenorhabditis elegans, GI71987612, Length=252, Percent_Identity=45.6349206349206, Blast_Score=193, Evalue=7e-50,
Organism=Caenorhabditis elegans, GI25153583, Length=252, Percent_Identity=45.6349206349206, Blast_Score=193, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI71987621, Length=252, Percent_Identity=45.6349206349206, Blast_Score=193, Evalue=9e-50,
Organism=Caenorhabditis elegans, GI17569499, Length=236, Percent_Identity=46.6101694915254, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17570161, Length=236, Percent_Identity=44.9152542372881, Blast_Score=188, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=236, Percent_Identity=44.9152542372881, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17570459, Length=247, Percent_Identity=43.3198380566802, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=222, Percent_Identity=46.3963963963964, Blast_Score=180, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=226, Percent_Identity=46.0176991150442, Blast_Score=179, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=178, Percent_Identity=47.1910112359551, Blast_Score=140, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=36.3095238095238, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=47.4576271186441, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17542664, Length=160, Percent_Identity=25.625, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI45556022, Length=238, Percent_Identity=48.3193277310924, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI18860517, Length=258, Percent_Identity=46.5116279069767, Blast_Score=208, Evalue=3e-54,
Organism=Drosophila melanogaster, GI24657857, Length=250, Percent_Identity=48, Blast_Score=202, Evalue=1e-52,
Organism=Drosophila melanogaster, GI62484448, Length=250, Percent_Identity=48, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI281365664, Length=250, Percent_Identity=48, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI62484274, Length=250, Percent_Identity=48, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI281361633, Length=237, Percent_Identity=40.084388185654, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361631, Length=237, Percent_Identity=40.084388185654, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI21356845, Length=234, Percent_Identity=37.6068376068376, Blast_Score=184, Evalue=5e-47,
Organism=Drosophila melanogaster, GI28573263, Length=238, Percent_Identity=39.0756302521008, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI281361635, Length=180, Percent_Identity=41.6666666666667, Blast_Score=148, Evalue=4e-36,
Organism=Drosophila melanogaster, GI45550506, Length=165, Percent_Identity=38.7878787878788, Blast_Score=120, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29131; Mature: 29131

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIKENEMGPFLVILLVAIGLLLASMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPII
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHEECCCCEEEEHHHH
QQVVRVDLRTIVMDVPSQDVISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQ
HHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHH
TTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKKVDLDESMIRAIA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEECEEEEEECCCHHHHHHHH
KQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTII
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCEEE
FPMPMEIGDILTSMAGKKK
EECCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKGIKENEMGPFLVILLVAIGLLLASMFKVFREYERGVVFMLGRFWRVKGPGLIIIIPII
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHEECCCCEEEEHHHH
QQVVRVDLRTIVMDVPSQDVISRDNVSVRVNAVVYFRVVVPENAIIQVENYFEATSQLAQ
HHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCEEEEHHHHHHHHHHHH
TTLRSVLGQHDLDDMLAEREQLNSDVQKILDAQTESWGIKVSNVEIKKVDLDESMIRAIA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCEEEECEEEEEECCCHHHHHHHH
KQAEAERDRRAKVIHAEGELQASEKLLQASQVLAQQPQAMQLRYLQTLATIAVNNNSTII
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCEEE
FPMPMEIGDILTSMAGKKK
EECCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]