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The map label for this gene is ykoW [H]

Identifier: 52842861

GI number: 52842861

Start: 3001753

End: 3002868

Strand: Direct

Name: ykoW [H]

Synonym: lpg2655

Alternate gene names: 52842861

Gene position: 3001753-3002868 (Clockwise)

Preceding gene: 52842860

Following gene: 52842862

Centisome position: 88.35

GC content: 37.37

Gene sequence:

>1116_bases
ATGTCATTACTAAAGAAAACAAGAGAGCAGGATTACTCAATCCTGGTTACCACTCAAGACCAGCAAAGAAAGCGCCATTT
ACTTAATGTTATTTCCATAGAGCTTTTAATTTTGGGTCTTTTGCTGATAATAACAAACCTTTGCCTGCTAAGAGCCTGGC
TTATAATCACTATGTTAATCGTGGGCATTTTCATCTTGCTCGGAAATTTAATCTTAATCAAAAAGAACTTCAATCTGGCC
TTGAGTGGGCACATTTTGAATATTCTTGTGTTGTCTATCATCATTGGAGGCAATCTCATCGTTGGAAAAACTACCATGTC
TTACCTGGGATGGTTCTATGTTTCTCCAATCGTTGCTTTTGCTACACTTGGATTAACCGGGTTAGTCGTCTATGGCCTGC
TGGCGATTGGGGCAATGTTTCTTTTTATATTCGAATTCTACATCCCCATCTATTCCATTTCTCAGGAATATGTATTTTTT
CTGGATAATACCAACCACCTGTTTATTTTTGCCCTTATTTTCACTGTTCTTTATCATTTTCTGGTTCAAAACTTACAATA
TGAATTGCTGTTAAAAGAGCAAAATTACCTGCTCATTGCTGATAAAGAAAAGTTCCATTATCTTTCGCATCACGACTCAC
TAACCAACTTACCCAACCGCTCTTACTTTCATGCTCATCTTCAGACCCTATTAGAGAACACTGACACTAAAAAGGAAGCC
ATTACTCTTTATTTTATGGATTTGGATAAATTCAAACCCATCAATGACGAATATGGTCATGAGTTCGGTGATCAGCTTTT
ACTTTTAACCAGCAAGCGTTTGCAATCCTGCTTTAGGAAAAATGATTTTATAGCCCGACTGGGAGGAGATGAATTTACCG
CGATTATCGTTCATAAACCCCATGATCAAATTGCTGAGGCTCTAACTCTTAGAATTGAACAGGAATTTGAACAACCTTTT
GTCATAAATGGCCAGACCATTCATTGCACCATAAGCGTTGGGATAGCCAATTACCCGCGCAATGCAAAAAATGCGGAAGA
TTTGTTAAAATGGGCTGATAAAGCGATGTATGACAATAAAAGGAAAAAATATCAAACGCTTAAACAAACCTCTTAA

Upstream 100 bases:

>100_bases
AACCTCAATGAGGACAGTGTGGCTGTTTTTTAATCTATAATTGAATTAATAAAGGAAATTAGCCCCATTGATTACCGGCC
AATGCGATTGAGGTAGGTGA

Downstream 100 bases:

>100_bases
CCAACATTCCTAATTTAATCAGTATGATTGGGCCTTCATTTTATCAAGCACAGGATGCAGCAATCTGACATTCACTTGAC
AATTAACTTTTACAACTTTA

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLLKKTREQDYSILVTTQDQQRKRHLLNVISIELLILGLLLIITNLCLLRAWLIITMLIVGIFILLGNLILIKKNFNLA
LSGHILNILVLSIIIGGNLIVGKTTMSYLGWFYVSPIVAFATLGLTGLVVYGLLAIGAMFLFIFEFYIPIYSISQEYVFF
LDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLIADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEA
ITLYFMDLDKFKPINDEYGHEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIAEALTLRIEQEFEQPF
VINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRKKYQTLKQTS

Sequences:

>Translated_371_residues
MSLLKKTREQDYSILVTTQDQQRKRHLLNVISIELLILGLLLIITNLCLLRAWLIITMLIVGIFILLGNLILIKKNFNLA
LSGHILNILVLSIIIGGNLIVGKTTMSYLGWFYVSPIVAFATLGLTGLVVYGLLAIGAMFLFIFEFYIPIYSISQEYVFF
LDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLIADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEA
ITLYFMDLDKFKPINDEYGHEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIAEALTLRIEQEFEQPF
VINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRKKYQTLKQTS
>Mature_370_residues
SLLKKTREQDYSILVTTQDQQRKRHLLNVISIELLILGLLLIITNLCLLRAWLIITMLIVGIFILLGNLILIKKNFNLAL
SGHILNILVLSIIIGGNLIVGKTTMSYLGWFYVSPIVAFATLGLTGLVVYGLLAIGAMFLFIFEFYIPIYSISQEYVFFL
DNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLIADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEAI
TLYFMDLDKFKPINDEYGHEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIAEALTLRIEQEFEQPFV
INGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRKKYQTLKQTS

Specific function: Probable signaling protein whose physiological role is not yet known [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=159, Percent_Identity=35.2201257861635, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=29.3814432989691, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788956, Length=199, Percent_Identity=33.6683417085427, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=32.2784810126582, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=191, Percent_Identity=34.0314136125654, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=159, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=32.3353293413174, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=29.7619047619048, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=30.3030303030303, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=30.625, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=27.8481012658228, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=33.5526315789474, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=32.484076433121, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 42845; Mature: 42714

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLKKTREQDYSILVTTQDQQRKRHLLNVISIELLILGLLLIITNLCLLRAWLIITMLI
CCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIFILLGNLILIKKNFNLALSGHILNILVLSIIIGGNLIVGKTTMSYLGWFYVSPIVAF
HHHHHHHCCEEEEEECCCEEEHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHH
ATLGLTGLVVYGLLAIGAMFLFIFEFYIPIYSISQEYVFFLDNTNHLFIFALIFTVLYHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH
LVQNLQYELLLKEQNYLLIADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEA
HHHCCCEEEEEECCCEEEEECCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCCCHHE
ITLYFMDLDKFKPINDEYGHEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKP
EEEEEEEHHHCCCCCCHHCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECC
HDQIAEALTLRIEQEFEQPFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNK
HHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCH
RKKYQTLKQTS
HHHHHHHHCCC
>Mature Secondary Structure 
SLLKKTREQDYSILVTTQDQQRKRHLLNVISIELLILGLLLIITNLCLLRAWLIITMLI
CHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIFILLGNLILIKKNFNLALSGHILNILVLSIIIGGNLIVGKTTMSYLGWFYVSPIVAF
HHHHHHHCCEEEEEECCCEEEHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHH
ATLGLTGLVVYGLLAIGAMFLFIFEFYIPIYSISQEYVFFLDNTNHLFIFALIFTVLYHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH
LVQNLQYELLLKEQNYLLIADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEA
HHHCCCEEEEEECCCEEEEECCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCCCHHE
ITLYFMDLDKFKPINDEYGHEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKP
EEEEEEEHHHCCCCCCHHCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECC
HDQIAEALTLRIEQEFEQPFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNK
HHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCH
RKKYQTLKQTS
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377; 11728710 [H]