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The map label for this gene is yagA [C]

Identifier: 52842774

GI number: 52842774

Start: 2898596

End: 2899441

Strand: Direct

Name: yagA [C]

Synonym: lpg2566

Alternate gene names: 52842774

Gene position: 2898596-2899441 (Clockwise)

Preceding gene: 52842773

Following gene: 52842788

Centisome position: 85.31

GC content: 44.21

Gene sequence:

>846_bases
GTGAAGCCAACTGTGCGTCGGGAGTTGGTTGATTATGCAGTCAATGCTCATGCTGTGAGTTTACGCCGCGCTTGCAAGGT
TGTGGGTATCAACGACTCGGTTTATCGCTATAAGCCGGATAGTCGGTCTGATGAAAGTGTCATTGTGGCATTACAAGAAT
CATCTGAACGTTACCCAGCGTATGGCTTCAGTAAATTGCTTAAGGTCTTACGGCGCCAGGGGCACAAATGGAATCATAAA
CGGGTTTACCGTGTGTATTGTGAGCTTAAGCTCAATATGCGTCGCAAGGGAAAAAAGCGGTTACCCAATCGCTCACCTGG
ACCTCTGAGTGTGCCAGCGTCCATTAACCAGTGTTGGTCAATGGACTTTATGTGCGATGCATTGATGTGTGGTCGACGCT
TCCGAACATTTAACATAGTGGATGATTTCAATCGTGAAGTGTTAGCGATCGAGATAGATTTGAACCTGCCCGCACAGCGA
GTAATTCGCGTATTAGAACGTGTTGTTGCCTGGCGTGGTCTCCCTGCCAAACTACGTATGGATAATGGTCCTGAATTTAT
TTCCAGAGCCCTAGCTGATTGGGCAGAAAAAAATAAGGTGCAGTTGGAATTTATCAAGCCAGCCAAGCCAACACAAAATT
CATTTATTGAGCGATTCAATAGAACTTATCGCACAGAAATACTGGATATGTATGCGTTCAAAAATTTACACGAAGTAAGA
GAGTTAACAGAAAACTGGATAAAGGAGTACAACGACGAAAGACCCCATGATTCACTAAATGATTTAACGCCGTGGGAATA
TCTGGCAAAAAATCAGCCAATGAACTCTAATTTAGGATGCCACTAA

Upstream 100 bases:

>100_bases
GTCTGAAAGACCTTGAAGAAGAGAACCGTCGTCTAAAGCAGATGTACGCTGAACTGAGTCTTGATCACAAAATCCTGAAG
GATATTGTTGAAAAAAAGCT

Downstream 100 bases:

>100_bases
ATATGGGGGGTTTACAGCTACAATTTATGCAACAAATTCAAAATAGCTTATTCCTCAGTACTATCAGAGCCTAGAATTAC
TATTCGCTCATTATCTTTAT

Product: ISxcC1 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKPTVRRELVDYAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPAYGFSKLLKVLRRQGHKWNHK
RVYRVYCELKLNMRRKGKKRLPNRSPGPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQR
VIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEKNKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVR
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH

Sequences:

>Translated_281_residues
MKPTVRRELVDYAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPAYGFSKLLKVLRRQGHKWNHK
RVYRVYCELKLNMRRKGKKRLPNRSPGPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQR
VIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEKNKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVR
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
>Mature_281_residues
MKPTVRRELVDYAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPAYGFSKLLKVLRRQGHKWNHK
RVYRVYCELKLNMRRKGKKRLPNRSPGPLSVPASINQCWSMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQR
VIRVLERVVAWRGLPAKLRMDNGPEFISRALADWAEKNKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVR
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=235, Percent_Identity=26.8085106382979, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33106; Mature: 33106

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTVRRELVDYAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPA
CCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCCEEEEEEECCCCCCCC
YGFSKLLKVLRRQGHKWNHKRVYRVYCELKLNMRRKGKKRLPNRSPGPLSVPASINQCWS
CCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
MDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQRVIRVLERVVAWRGLPAKLRM
HHHHHHHHHHCCCCCEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEC
DNGPEFISRALADWAEKNKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVR
CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKPTVRRELVDYAVNAHAVSLRRACKVVGINDSVYRYKPDSRSDESVIVALQESSERYPA
CCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCCEEEEEEECCCCCCCC
YGFSKLLKVLRRQGHKWNHKRVYRVYCELKLNMRRKGKKRLPNRSPGPLSVPASINQCWS
CCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
MDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLNLPAQRVIRVLERVVAWRGLPAKLRM
HHHHHHHHHHCCCCCEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEC
DNGPEFISRALADWAEKNKVQLEFIKPAKPTQNSFIERFNRTYRTEILDMYAFKNLHEVR
CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTENWIKEYNDERPHDSLNDLTPWEYLAKNQPMNSNLGCH
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]